View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0448_high_9 (Length: 292)
Name: NF0448_high_9
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_high_9 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 86 - 292
Target Start/End: Complemental strand, 14371195 - 14370989
Alignment:
| Q |
86 |
acatcatcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttgaaaaaggag |
185 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14371195 |
acatcctcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaaatccagcatttgaaaaaggag |
14371096 |
T |
|
| Q |
186 |
taacagtgtcactccctttagtctcttgtaactctaaaccattaccattaccaacatgtgtatcaccattcaaaagaggctcatgaatagttctatcact |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14371095 |
caacagtgtcactccctttagtcgcttgtaactctaaaccattaccattaccaacatgtgtatcaccattcaaaagaggctcatgaatagttctatcact |
14370996 |
T |
|
| Q |
286 |
ttcttca |
292 |
Q |
| |
|
||||||| |
|
|
| T |
14370995 |
ttcttca |
14370989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 14242126 - 14242332
Alignment:
| Q |
86 |
acatcatcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttgaaaaaggag |
185 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14242126 |
acatcctcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttgaaaaaggag |
14242225 |
T |
|
| Q |
186 |
taacagtgtcactccctttagtctcttgtaactctaaaccattaccattaccaacatgtgtatcaccattcaaaagaggctcatgaatagttctatcact |
285 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
14242226 |
taacagtgtcactccctttagtcttgttcaactctaaagcattatcgttaccaacatgtgtatcaccattcaaaagaggctcgtgaatagtttcatcact |
14242325 |
T |
|
| Q |
286 |
ttcttca |
292 |
Q |
| |
|
||||||| |
|
|
| T |
14242326 |
ttcttca |
14242332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 41453141 - 41453353
Alignment:
| Q |
86 |
acatcatcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttgaaaaaggag |
185 |
Q |
| |
|
||||| ||||||||||| | ||||||| ||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||| | |||||||| | |
|
|
| T |
41453141 |
acatcctcaaggtctaagtttttcttataaccaaatgctataagtggtcccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaagggg |
41453240 |
T |
|
| Q |
186 |
taacagtgtcactccctttagtctcttgtaactctaa------accattaccattaccaacatgtgtatcaccattcaaaagaggctcatgaatagttct |
279 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| || | ||||||||||||||| ||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
41453241 |
taacagtgtcactccctttagtctcttttagctccaagggattaacattaccattaccaatatgtgtatcaccattcaaaagaggctcttgaaaagtgct |
41453340 |
T |
|
| Q |
280 |
atcactttcttca |
292 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41453341 |
atcactttcttca |
41453353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 41439978 - 41440190
Alignment:
| Q |
92 |
tcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttgaaaaaggagtaacag |
191 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| | |||||||| ||||||| |
|
|
| T |
41439978 |
tcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacag |
41440077 |
T |
|
| Q |
192 |
tgtcactccctttagtctcttgtaactctaa------------accattaccattaccaacatgtgtatcaccattcaaaagaggctcatgaatagttct |
279 |
Q |
| |
|
|||||||||||||||||| || ||| || || ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41440078 |
tgtcactccctttagtcttttttaaatccaagggattaacattaccattaccattaccaatatgtgtatcaccattcaaaagaggctcttgaagagttct |
41440177 |
T |
|
| Q |
280 |
atcactttcttca |
292 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41440178 |
ttcactttcttca |
41440190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 21111551 - 21111625
Alignment:
| Q |
84 |
ggacatcatcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagac |
158 |
Q |
| |
|
||||||| |||| |||||| | |||||||||||||||||||||||||| | |||||||||||| |||||||||| |
|
|
| T |
21111551 |
ggacatcctcaatgtctaaggctttcttattgccaaatgctataagtggtcccacccaagtgaaagtgagaagac |
21111625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1914 times since January 2019
Visitors: 3241