View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_low_1 (Length: 518)
Name: NF0448_low_1
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 30346111 - 30346608
Alignment:
| Q |
1 |
cttgtactgcaccatgtgcagataaattttctacttattagatcaacaagtcacgtcatatcacatttgatctaatgatattatagtaagatttatctgc |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30346111 |
cttgtactgcaccatgcgcagataaattttctacttattagatcaacaagtcacgtcatatcacatttgatctaatgatattatagtaagacttat---- |
30346206 |
T |
|
| Q |
101 |
gcatggttgaaacaagctcaaacaagctcgtgtatgatgtaaatcttgtctcacttgtgtaccataaaattgatgttaaattagtctcttaaattagaga |
200 |
Q |
| |
|
|| || || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346207 |
---tgattcaatg--gttgaaacaagctcgtgtatgatgtaaatcttgtctcacttgtgtaccataaaattgatgttaaattagtctcttaaattagaga |
30346301 |
T |
|
| Q |
201 |
actttggttattaatttagtcnnnnnnncttaattcagtaccataactttaaagttttaatgtttgtcttgataatcttgtcnnnnnnnnnnnngtttgt |
300 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30346302 |
actttggttattaatttagtctttttttcttaattcagtaccataactttaaagttttaatgtttgtcttgataatcttgt---aaaaaaaaaagtttgt |
30346398 |
T |
|
| Q |
301 |
cttgataaacatgagactattcaaagcattatctagtactttagtgcacggaataaattgactgacactcaaattttcctttcccaattgcgagattaat |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346399 |
cttgataaacatgagactattcaaggcattatctagtactttagtgcacggaataaattgactgacactcaaattttcctttcccaattgcgagattaat |
30346498 |
T |
|
| Q |
401 |
tcaagttctgaagtgttactatcttgaagtgaaaacttgttggagttattaaatctagtaaaagtcatttcataatttgttgagcttaactgctcttagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346499 |
tcaagttctgaagtgttactatcttgaagtgaaaacttgttggagttattaaatctagtaaaagtcatttcataatttgttgagcttaactgctcttagt |
30346598 |
T |
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