View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_low_2 (Length: 486)
Name: NF0448_low_2
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_low_2 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 29074080 - 29073657
Alignment:
| Q |
10 |
gcacagatagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaa |
109 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29074080 |
gcacacatagaaagtattttatataacacaaagcgtagtagaaaagaacactaaagtcttacaaaaacaataaaccgaacaagaccaggaaataaataaa |
29073981 |
T |
|
| Q |
110 |
aattcaatgataatattaatgtaattattgcaaggattttggaggtaattattgcatcctgcccatgaatactcaagtcaattcatctcgtcacaaaact |
209 |
Q |
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| T |
29073980 |
aattcaatgataatattaatgtaattattgcaaggattttggaggtaattattgcatcctgccgatgaatacacaagtaaattcatctcgtcacaaaact |
29073881 |
T |
|
| Q |
210 |
aatgtaccattgttcattgataccaaagaggacaagaaat-------------aaatgataaaattaacgtaagttactgtcttttgtttttgttttgag |
296 |
Q |
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| T |
29073880 |
aatgtaccattgttcattgacaccaaagaggacaagaaataaacaataattcaaaatgataaaattaacgtaagttactatcttttgtttttgttttgag |
29073781 |
T |
|
| Q |
297 |
gtaatacgagttactatgttctatgattaaatggatgttcacatttgacacaagataaactatatgagaaacatttaggataaagttatgaaggtaaaat |
396 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073780 |
gtaatatgagttaatatgttctatgattaaatggatgttcacatttgacacaagataaactatatgagaaacatttaggataaagttatgaaggtaaaat |
29073681 |
T |
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| Q |
397 |
acaaagtataacaaagggaaaaaa |
420 |
Q |
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| T |
29073680 |
ataaagtatagcaaagggaaaaaa |
29073657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 29103501 - 29103404
Alignment:
| Q |
16 |
atagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaatt |
113 |
Q |
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| T |
29103501 |
atagaaagtattctatttagtgcaaggcgtattagaatagaacactaaagtcttacaaaagcaacaaaccgaacaagatttggaaataaataaaaatt |
29103404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 29067161 - 29067097
Alignment:
| Q |
333 |
gttcacatttgacacaagataaactatatgagaaacatttaggataaagttatgaaggtaaaata |
397 |
Q |
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| T |
29067161 |
gttcatatttgacacgagagaaattatatgaaatacatttaggataaatttgtgaaggtaaaata |
29067097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 207 - 420
Target Start/End: Original strand, 11849287 - 11849513
Alignment:
| Q |
207 |
actaatgtaccattgttcattgataccaaagaggacaagaaataaat-------------gataaaattaacgtaagttactgtcttttgtttttgtttt |
293 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11849287 |
actaatgtaccatttttcattgacaccaaagaggacaagaaataaataataattcaaaatgataaaattaacgtaagttactgtcttttgtttttgtttt |
11849386 |
T |
|
| Q |
294 |
gaggtaatacgagttactatgttctatgattaaatggatgttcacatttgacacaagataaactatatgagaaacatttaggataaagttatgaaggtaa |
393 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11849387 |
gaggtaatacgagttactatgttctatgactaaatggatgttcacatttgacacaagataaactatatgagatacatttaggataaagttatgaaggtaa |
11849486 |
T |
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| Q |
394 |
aatacaaagtataacaaagggaaaaaa |
420 |
Q |
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|||| ||||||||||||||| ||||| |
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| T |
11849487 |
aatatgaagtataacaaaggggaaaaa |
11849513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 55729 - 55789
Alignment:
| Q |
24 |
tattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaac |
84 |
Q |
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|||| ||||||||||| ||||| ||||||| ||||||| |||||||| ||||||| |||| |
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| T |
55729 |
tattatatctaacacagtgcgtactagaataaaacactagagtcttacgaaaacaacaaac |
55789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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