View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0448_low_20 (Length: 250)
Name: NF0448_low_20
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_low_20 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 53944928 - 53944721
Alignment:
| Q |
1 |
ccaagacttcgtaattatcactggacatgcaatattttgatttataggacccaaatttggtgagcaggtaaagaaattctaaattagaaagtattttcct |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53944928 |
ccaagacttcctaattatcactggacatgcaatattttgattaataggacccaaatttggtgagcaggtaaagaaattctaaattagaaagtattttcct |
53944829 |
T |
|
| Q |
101 |
aatgaaaacaatgaatgnnnnnnncccaccagacgaagttggttacattgattgaacaacgacaccattactactgtcatcaataataagactcattttg |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53944828 |
aatgaaaacaatgaatgtttttttcccactagacgaagttggttacattgattgaacaacgacaccattactactgtcatcaataataagactcattttg |
53944729 |
T |
|
| Q |
201 |
cagggatg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
53944728 |
cagggatg |
53944721 |
T |
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