View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_low_23 (Length: 226)
Name: NF0448_low_23
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 47001929 - 47001724
Alignment:
| Q |
6 |
agctaaatttattcttgcaactttagatatcaccatcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcaga |
105 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47001929 |
agctaaatttattcttgcaactttagatatcaccgtcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccacaga |
47001830 |
T |
|
| Q |
106 |
gcagttaaccaagatgttcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattg |
205 |
Q |
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||||||||||| |||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47001829 |
gcagttaaccatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattg |
47001730 |
T |
|
| Q |
206 |
atgatg |
211 |
Q |
| |
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||||| |
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|
| T |
47001729 |
gtgatg |
47001724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 46998237 - 46998032
Alignment:
| Q |
6 |
agctaaatttattcttgcaactttagatatcaccatcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcaga |
105 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||| | || ||||||||||||| |||| |
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| T |
46998237 |
agctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccaccacaga |
46998138 |
T |
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| Q |
106 |
gcagttaaccaagatgttcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattg |
205 |
Q |
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| T |
46998137 |
gcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattg |
46998038 |
T |
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| Q |
206 |
atgatg |
211 |
Q |
| |
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||||| |
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| T |
46998037 |
gtgatg |
46998032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 46995989 - 46995801
Alignment:
| Q |
6 |
agctaaatttattcttgcaactttagatatcaccatcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcaga |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||| | || ||||||||||| | |||| |
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| T |
46995989 |
agctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccaattgatgtcccacccattgttcattcattctttgaccatcacaga |
46995890 |
T |
|
| Q |
106 |
gcagttaaccaagatgttcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaa |
194 |
Q |
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| T |
46995889 |
gcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaa |
46995801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 46975179 - 46974977
Alignment:
| Q |
1 |
cgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccacc |
100 |
Q |
| |
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|||| ||||| |||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||| || |
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| T |
46975179 |
cgcggagctagatttattcatgcaactttagatatcaccataaatgatattctctcaccagttgatgtcccacccattgtccaatcgttctttgatcatg |
46975080 |
T |
|
| Q |
101 |
gcagagcagttaaccaagatgttcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaatcattg |
200 |
Q |
| |
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|| |||||| | ||| |||| ||| |||||| |||| || ||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46975079 |
acaaagcagtcagccatgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattg |
46974980 |
T |
|
| Q |
201 |
tat |
203 |
Q |
| |
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||| |
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| T |
46974979 |
tat |
46974977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 46981161 - 46980966
Alignment:
| Q |
6 |
agctaaatttattcttgcaactttagatatcaccatcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcaga |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| ||| ||| | || |||||||||||||||| || | ||||||||||| || || | |
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| T |
46981161 |
agctaaatttattcatgcaactttagatatcaccataaatgatatcctcacccccattgatgtcccacccattgtccattcgttctttgatcatgacaaa |
46981062 |
T |
|
| Q |
106 |
gcagttaaccaagatgttcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaatcattgt |
201 |
Q |
| |
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||||| ||||| |||| ||| |||||| |||||||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
46981061 |
gcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgt |
46980966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 46958879 - 46958720
Alignment:
| Q |
52 |
ctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctactcagg |
151 |
Q |
| |
|
||||||||||||||||| || || || ||| | || |||||||| | | || |||| | ||||| || | |||||||||||| ||||| || | ||| | |
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| T |
46958879 |
ctctcacctgttgatgttcctccaattgttgagtcattctttgatctcaacaaagcaatcaaccacgacggtcacaccatgccattgttatcaattcaag |
46958780 |
T |
|
| Q |
152 |
tcactgaattattggatggtgttttcataggttgttccatgaatcattgtattgatgatg |
211 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
46958779 |
tcacagagctagtggatggtgttttcataggttgttccctgaatcattgtattggtgatg |
46958720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 46955957 - 46955864
Alignment:
| Q |
118 |
gatgttcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattgatgatg |
211 |
Q |
| |
|
|||| |||||||||||| ||| | || | ||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
46955957 |
gatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatg |
46955864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 46951615 - 46951527
Alignment:
| Q |
123 |
tcacaccatgcctttgttgtctactcaggtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattgatgatg |
211 |
Q |
| |
|
|||||||||||| ||||| || | || |||||||| || | ||||||||||||||||||||||| |||||||| | ||||| ||||| |
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|
| T |
46951615 |
tcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatg |
46951527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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