View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_low_25 (Length: 215)
Name: NF0448_low_25
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 27313851 - 27313945
Alignment:
| Q |
71 |
gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctatgaggttttatatatatattctct |
165 |
Q |
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| T |
27313851 |
gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtttattaggttttatatatatattctct |
27313945 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 11828017 - 11827948
Alignment:
| Q |
88 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctatgaggttttatatata |
157 |
Q |
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| T |
11828017 |
tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatatata |
11827948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 43516134 - 43516204
Alignment:
| Q |
88 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctatgaggttttatatatat |
158 |
Q |
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| T |
43516134 |
tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttttatatatat |
43516204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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