View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0448_low_4 (Length: 396)

Name: NF0448_low_4
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0448_low_4
NF0448_low_4
[»] chr4 (1 HSPs)
chr4 (45-313)||(41705132-41705399)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 45 - 313
Target Start/End: Original strand, 41705132 - 41705399
Alignment:
Q  45 atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatg 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||        |||||||  ||||||||||||||    
T  41705132 atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatg 41705228  T
Q  143 gcttctcccctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatag 242  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41705229 gcttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatag 41705328  T
Q  243 aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705329 aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa 41705399  T

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