View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_low_5 (Length: 395)
Name: NF0448_low_5
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 45 - 312
Target Start/End: Original strand, 41705132 - 41705399
Alignment:
| Q |
45 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnncaaatac--tgtttaaccaaatgg |
142 |
Q |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaacaaataccctgtttaaccaaatgg |
41705229 |
T |
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| Q |
143 |
cttctcccctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataataga |
242 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41705230 |
cttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgataga |
41705329 |
T |
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| Q |
243 |
attcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705330 |
attcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
41705399 |
T |
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