View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0448_low_7 (Length: 382)

Name: NF0448_low_7
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0448_low_7
NF0448_low_7
[»] chr1 (21 HSPs)
chr1 (1-361)||(24176381-24176740)
chr1 (317-358)||(26238129-26238170)
chr1 (316-357)||(42325560-42325601)
chr1 (317-361)||(36878462-36878506)
chr1 (317-360)||(5376515-5376558)
chr1 (3-58)||(24183004-24183059)
chr1 (314-361)||(28674798-28674845)
chr1 (323-361)||(39101196-39101234)
chr1 (324-361)||(1864894-1864931)
chr1 (316-361)||(6427350-6427395)
chr1 (324-361)||(7918225-7918262)
chr1 (317-358)||(17831548-17831589)
chr1 (324-361)||(34298444-34298481)
chr1 (324-361)||(34712397-34712434)
chr1 (324-361)||(40181879-40181916)
chr1 (317-361)||(398779-398823)
chr1 (317-361)||(17425107-17425151)
chr1 (312-356)||(19909293-19909337)
chr1 (317-361)||(25098569-25098613)
chr1 (324-360)||(31015051-31015087)
chr1 (317-361)||(40747787-40747831)
[»] chr8 (14 HSPs)
chr8 (317-361)||(4611535-4611579)
chr8 (317-361)||(34897086-34897130)
chr8 (324-361)||(3025559-3025596)
chr8 (324-361)||(7658471-7658508)
chr8 (324-361)||(13203649-13203686)
chr8 (324-361)||(14134707-14134744)
chr8 (316-357)||(14227222-14227263)
chr8 (316-361)||(33382033-33382078)
chr8 (317-358)||(37225760-37225801)
chr8 (317-361)||(2035740-2035784)
chr8 (322-358)||(3508058-3508094)
chr8 (317-361)||(24362216-24362260)
chr8 (317-361)||(39954293-39954337)
chr8 (317-361)||(44067517-44067561)
[»] chr3 (14 HSPs)
chr3 (317-361)||(16192764-16192808)
chr3 (316-361)||(8039849-8039894)
chr3 (324-361)||(11251986-11252023)
chr3 (316-361)||(21211288-21211333)
chr3 (317-358)||(25074790-25074831)
chr3 (317-361)||(7928451-7928495)
chr3 (317-361)||(8383258-8383302)
chr3 (317-361)||(10690276-10690320)
chr3 (317-357)||(16789668-16789708)
chr3 (322-358)||(20691325-20691361)
chr3 (322-358)||(21149073-21149109)
chr3 (317-361)||(24205055-24205099)
chr3 (317-361)||(32804554-32804598)
chr3 (317-361)||(34307794-34307838)
[»] chr2 (17 HSPs)
chr2 (317-361)||(19573979-19574023)
chr2 (317-358)||(10535776-10535817)
chr2 (317-361)||(21616763-21616807)
chr2 (316-358)||(18570972-18571014)
chr2 (319-361)||(23921256-23921298)
chr2 (317-359)||(40681983-40682025)
chr2 (324-361)||(21782832-21782869)
chr2 (324-361)||(25846749-25846786)
chr2 (316-361)||(28412350-28412395)
chr2 (323-360)||(44605154-44605191)
chr2 (312-361)||(44860316-44860365)
chr2 (317-361)||(18276522-18276566)
chr2 (317-361)||(23718027-23718071)
chr2 (317-361)||(24105699-24105743)
chr2 (317-361)||(28677910-28677954)
chr2 (317-361)||(37411258-37411302)
chr2 (317-361)||(42832290-42832334)
[»] chr6 (13 HSPs)
chr6 (316-361)||(7265607-7265652)
chr6 (316-361)||(7569182-7569227)
chr6 (316-361)||(31579239-31579284)
chr6 (317-361)||(13851737-13851781)
chr6 (317-361)||(19040353-19040397)
chr6 (312-361)||(5462682-5462731)
chr6 (324-361)||(9025508-9025545)
chr6 (316-361)||(30866158-30866203)
chr6 (317-358)||(34446566-34446607)
chr6 (317-361)||(1532241-1532285)
chr6 (317-361)||(9658880-9658924)
chr6 (317-361)||(17341678-17341722)
chr6 (317-361)||(32511680-32511724)
[»] chr5 (17 HSPs)
chr5 (317-358)||(21577125-21577166)
chr5 (317-361)||(28588688-28588732)
chr5 (317-360)||(27932236-27932279)
chr5 (317-363)||(4344743-4344789)
chr5 (319-361)||(5467992-5468034)
chr5 (327-361)||(21194137-21194171)
chr5 (317-358)||(2577197-2577238)
chr5 (324-361)||(6471903-6471940)
chr5 (316-361)||(12264843-12264888)
chr5 (316-361)||(30502402-30502447)
chr5 (316-361)||(30542745-30542790)
chr5 (317-361)||(3966504-3966548)
chr5 (322-358)||(18607114-18607150)
chr5 (316-360)||(24906316-24906360)
chr5 (317-361)||(32630749-32630793)
chr5 (317-361)||(36838544-36838588)
chr5 (317-361)||(38749577-38749621)
[»] scaffold0022 (1 HSPs)
scaffold0022 (317-361)||(99894-99938)
[»] chr7 (16 HSPs)
chr7 (317-361)||(29787383-29787427)
chr7 (327-361)||(17307904-17307938)
chr7 (317-359)||(32308121-32308163)
chr7 (324-361)||(2424622-2424659)
chr7 (324-361)||(5835255-5835292)
chr7 (324-361)||(7328705-7328742)
chr7 (316-361)||(12278835-12278880)
chr7 (317-358)||(38134423-38134464)
chr7 (317-361)||(1433455-1433499)
chr7 (317-361)||(16341497-16341541)
chr7 (317-361)||(18233612-18233656)
chr7 (317-361)||(20549792-20549836)
chr7 (324-360)||(21880160-21880196)
chr7 (324-360)||(27945049-27945085)
chr7 (324-360)||(30813820-30813856)
chr7 (317-361)||(43249994-43250038)
[»] chr4 (16 HSPs)
chr4 (317-361)||(8423732-8423776)
chr4 (317-361)||(16402225-16402269)
chr4 (317-361)||(22440614-22440658)
chr4 (317-361)||(24343508-24343552)
chr4 (317-361)||(32910552-32910596)
chr4 (316-360)||(44796977-44797021)
chr4 (318-361)||(903924-903967)
chr4 (322-361)||(19230323-19230362)
chr4 (317-355)||(7012067-7012105)
chr4 (316-361)||(16189709-16189754)
chr4 (317-358)||(18513258-18513299)
chr4 (317-358)||(20743295-20743336)
chr4 (324-361)||(36635332-36635369)
chr4 (325-358)||(46180953-46180986)
chr4 (317-361)||(7727973-7728017)
chr4 (317-361)||(40613451-40613495)
[»] scaffold0004 (1 HSPs)
scaffold0004 (317-360)||(92808-92851)
[»] scaffold0049 (1 HSPs)
scaffold0049 (314-360)||(63771-63817)
[»] scaffold0050 (1 HSPs)
scaffold0050 (324-361)||(70286-70323)
[»] scaffold0123 (1 HSPs)
scaffold0123 (317-361)||(44539-44583)
[»] scaffold0066 (1 HSPs)
scaffold0066 (324-360)||(33378-33414)
[»] scaffold0044 (1 HSPs)
scaffold0044 (325-361)||(53189-53225)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 24176740 - 24176381
Alignment:
Q  1 taaaatatacatctaaagtttctgatagctcatatgcaccacatgcatattccgaaaatattgcattagaaagattacacagtgagaagattattatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24176740 taaaatatacatctaaagtttctgatagctcatatgcaccacatgcatattccgaaaatattgcattagaaagattacacagtgaaaagattattatttt 24176641  T
Q  101 tgtcttgtgtgaaactcaaaattttcaattctttgtccttcaggcaataatatttaaattgaaatttgttagagaactactttagaaaattgaagccata 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24176640 tgtcttgtgtgaaactcaaaattttcaattctttatccttcaggcaataatatttaaattgaaatttgttagagaactgctttagaaaattgaagccata 24176541  T
Q  201 gagcttaagactaaatatgagaagaatacttttatcaataacaaaaggaagacagtgacagaagaaacagtatgcatcctatgaaatactgacacaaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24176540 gagcttaagactaaatatgagaagaatacttttatcaataacaaaaggaagacagtgacagaagaaacagtatgcatcctatgaaatactgacacaaaaa 24176441  T
Q  301 cggacaccgatcactaacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24176440 tggaca-cgatcactaacaccgataataatttgagaaaataacatcattcagtgtaattat 24176381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 26238170 - 26238129
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  26238170 acaccgctaataatttgagaaaataacataattcagtgtaat 26238129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 42325560 - 42325601
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaa 357  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  42325560 aacaccgataataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 36878462 - 36878506
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  36878462 acaccgctaataatttgagaaaatcacataattcagtgtaattat 36878506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 5376558 - 5376515
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatta 360  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||    
T  5376558 acaccgctaataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 24183059 - 24183004
Alignment:
Q  3 aaatatacatctaaagtttctgatagctcatatgcaccacatgcatattccgaaaa 58  Q
    |||||||  |||||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  24183059 aaatatatctctaaaatttatgatacctcatatgcaccacatgcatattcccaaaa 24183004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 28674798 - 28674845
Alignment:
Q  314 ctaacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||| ||||||||||||||||| |||| ||||||| |||||||    
T  28674798 ctaacaccgttaataatttgagaaaattacataattcagtataattat 28674845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 361
Target Start/End: Complemental strand, 39101234 - 39101196
Alignment:
Q  323 ataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  39101234 ataataatttgagaaaataacataattaagtgtaattat 39101196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 1864931 - 1864894
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  1864931 taataatttgagaaaatcacataattcagtgtaattat 1864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 6427350 - 6427395
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| |||| ||||| |||||||||    
T  6427350 aacaccgctaataatttgagaaaatcacataattcaatgtaattat 6427395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 7918262 - 7918225
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  7918262 taataatttgagaaaatcacataattcagtgtaattat 7918225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 17831589 - 17831548
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  17831589 acaccgctaataatttgagaaaatcacattattcagtgtaat 17831548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 34298444 - 34298481
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  34298444 taataatttgagaaaatcacataattcagtgtaattat 34298481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 34712434 - 34712397
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  34712434 taataatttgagaaaataacataatttagtgtaattat 34712397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 40181879 - 40181916
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  40181879 taataatttgagaaaatcacataattcagtgtaattat 40181916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 398823 - 398779
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||||    
T  398823 acaccgctaataatttgaaaaaatcacataattcagtgtaattat 398779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 17425151 - 17425107
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||||| ||||| |||| ||||| |||||||||    
T  17425151 acaccgataataatttgataaaatcacataattcaatgtaattat 17425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 19909293 - 19909337
Alignment:
Q  312 cactaacaccgataataatttgagaaaataacatcattcagtgta 356  Q
    ||||||||||| ||||||||||||||||| |||| | ||||||||    
T  19909293 cactaacaccgctaataatttgagaaaatcacataactcagtgta 19909337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 25098613 - 25098569
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| | ||||||||||||||| |||| |||||||||||||||    
T  25098613 acaccgctgataatttgagaaaatcacataattcagtgtaattat 25098569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 31015051 - 31015087
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  31015051 taataatttgagaaaatcacataattcagtgtaatta 31015087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 40747831 - 40747787
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| ||||| |||||||||    
T  40747831 acacggataataatttgagaaaatgacataattcaatgtaattat 40747787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 4611535 - 4611579
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  4611535 acaccgctaataatttgagaaaataacataattcagtgtaattat 4611579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 34897086 - 34897130
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  34897086 acaccgctaataatttgagaaaatcacataattcagtgtaattat 34897130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 3025559 - 3025596
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattat 3025596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 7658471 - 7658508
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  7658471 taataatttgagaaaattacataattcagtgtaattat 7658508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 13203649 - 13203686
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  13203649 taataatttgagaaaattacataattcagtgtaattat 13203686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 14134707 - 14134744
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattat 14134744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 14227222 - 14227263
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaa 357  Q
    |||||| ||||||||||||||||||||||| ||||| |||||    
T  14227222 aacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 33382078 - 33382033
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| ||||||| |||| |||||| ||||||||    
T  33382078 aacaccgataataatttaagaaaatgacataattcagagtaattat 33382033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 37225801 - 37225760
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaat 37225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 2035740 - 2035784
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||| |||||  ||||||||||| |||||||||||||||    
T  2035740 acaccgataacaatttaggaaaataacattattcagtgtaattat 2035784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 3508058 - 3508094
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaat 3508094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 24362260 - 24362216
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||| ||| |||| |||||||||||||||    
T  24362260 acaccgctaataatttgagagaatcacataattcagtgtaattat 24362216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 39954337 - 39954293
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||||    
T  39954337 acaccgctaataatttgagaaaatcacataatttagtgtaattat 39954293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 44067517 - 44067561
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| || ||||||||||||    
T  44067517 acacggataataatttgagaaaatgacataatacagtgtaattat 44067561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 16192808 - 16192764
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  16192808 acaccgttaataatttgagaaaataacataattcagtgtaattat 16192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 8039894 - 8039849
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| | || |||||||||||||||    
T  8039894 aacaccgctaataatttgagaaaattatataattcagtgtaattat 8039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 11251986 - 11252023
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  11251986 taataatttgagaaaatcacataattcagtgtaattat 11252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 21211288 - 21211333
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  21211288 aacacggataataatttgagaaaattacatagttcagtgtaattat 21211333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 25074790 - 25074831
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| |||| ||| ||||||||    
T  25074790 acaccgataataatttgagaaaatgacataattgagtgtaat 25074831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 7928451 - 7928495
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||||    
T  7928451 acaccgctaataatttgaaaaaatcacataattcagtgtaattat 7928495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 8383258 - 8383302
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| | || |||||||||||||||    
T  8383258 acaccgctaataatttgagaaaatcatataattcagtgtaattat 8383302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 10690320 - 10690276
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||| ||||||||| |||| |||||||||||||||    
T  10690320 acaccgctaataatctgagaaaatcacataattcagtgtaattat 10690276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 16789708 - 16789668
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaa 357  Q
    |||| ||||||||||||||||||| |||| |||||||||||    
T  16789708 acacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 20691325 - 20691361
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaat 20691361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 21149073 - 21149109
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaat 21149109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 24205099 - 24205055
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| || ||||||||||||    
T  24205099 acacggataataatttgagaaaatgacataatacagtgtaattat 24205055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 32804598 - 32804554
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||||    
T  32804598 acaccgttaataatttgagaaaatcacataatttagtgtaattat 32804554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 34307838 - 34307794
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| ||||  ||||||||||||||    
T  34307838 acaccgctaataatttgagaaaatcacatatttcagtgtaattat 34307794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 19573979 - 19574023
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  19573979 acaccgataataatttaagaaaataacataattcagtgtaattat 19574023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 10535817 - 10535776
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  10535817 acaccgataataatttgagaaaatgacataattcagtgtaat 10535776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 21616763 - 21616807
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  21616763 acaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 18570972 - 18571014
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||    
T  18570972 aacaccgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 23921256 - 23921298
Alignment:
Q  319 accgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||| |||| |||||||||||||||    
T  23921256 accgttaataatttgagaaaattacataattcagtgtaattat 23921298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 40681983 - 40682025
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatt 359  Q
    |||||||||||||||||||||||| |||| ||||| |||||||    
T  40681983 acaccgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 21782869 - 21782832
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  21782869 taataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 25846749 - 25846786
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  25846749 taataatttgagaaaatcacatgattcagtgtaattat 25846786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 28412350 - 28412395
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||| ||||| |||| |||||||||||||||    
T  28412350 aacaccgttaataatttgataaaatcacataattcagtgtaattat 28412395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 44605191 - 44605154
Alignment:
Q  323 ataataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaatta 44605154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 44860316 - 44860365
Alignment:
Q  312 cactaacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| |||||| |||||||||||||||||  ||| |||||||||||||||    
T  44860316 cactgacaccgctaataatttgagaaaatcgcataattcagtgtaattat 44860365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 18276522 - 18276566
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| || | |||||||||||||||    
T  18276522 acaccgctaataatttgagaaaatcacttaattcagtgtaattat 18276566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 23718027 - 23718071
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||| | |||| |||||||||||||||    
T  23718027 acaccgctaataatttgagaaagtcacataattcagtgtaattat 23718071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 24105699 - 24105743
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||| | |||| |||||||||||||||    
T  24105699 acaccgctaataatttgagaaagtcacataattcagtgtaattat 24105743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 28677910 - 28677954
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||||    
T  28677910 acaccgctaataatttgaaaaaatcacataattcagtgtaattat 28677954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 37411302 - 37411258
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| ||||||||| |||||    
T  37411302 acaccgctaataatttgagaaaatcacataattcagtgtgattat 37411258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 42832334 - 42832290
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| ||||  ||||||||||||||    
T  42832334 acaccgctaataatttgagaaaattacatatttcagtgtaattat 42832290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 7265652 - 7265607
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||||    
T  7265652 aacaccgctaataatttgagaaaatcacataattcagtgtaattat 7265607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 7569227 - 7569182
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||    
T  7569227 aacacagataataatttgagaaaattacataattcagtgtaattat 7569182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 31579284 - 31579239
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||||    
T  31579284 aacaccgttaataatttgagaaaatcacataattcagtgtaattat 31579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 13851737 - 13851781
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| |||||||||||||||||||| | |||||||||||||||    
T  13851737 acaccgctaataatttgagaaaataacgtaattcagtgtaattat 13851781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 19040353 - 19040397
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  19040353 acaccgctaataatttgagaaaatcacataattcagtgtaattat 19040397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 5462682 - 5462731
Alignment:
Q  312 cactaacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| |||||| ||||||||||||||||| |||| ||||| |||||||||    
T  5462682 cactgacaccgttaataatttgagaaaatcacataattcattgtaattat 5462731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 9025545 - 9025508
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  9025545 taataatttgagaaaatcacataattcagtgtaattat 9025508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 30866203 - 30866158
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| |||| ||||| |||||||||    
T  30866203 aacaccgctaataatttgagaaaatcacataattcaatgtaattat 30866158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 34446566 - 34446607
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||| ||||||||||||||||||| |||| ||||||||||||    
T  34446566 acacggataataatttgagaaaatgacataattcagtgtaat 34446607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 1532241 - 1532285
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||||    
T  1532241 acaccgctaataatttgataaaattacataattcagtgtaattat 1532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 9658880 - 9658924
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||| ||||||| |||| |||||||||||||||    
T  9658880 acaccgctaataatttaagaaaatcacataattcagtgtaattat 9658924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 17341722 - 17341678
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||||    
T  17341722 acaccgttaataatttgataaaatcacataattcagtgtaattat 17341678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 32511724 - 32511680
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||| ||||||| |||| |||||||||||||||    
T  32511724 acaccgctaataatttaagaaaatcacataattcagtgtaattat 32511680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 21577166 - 21577125
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  21577166 acaccgataataatttgagaaaataacataattaagtgtaat 21577125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 28588732 - 28588688
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  28588732 acaccggtaataatttgagaaaatcacataattcagtgtaattat 28588688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 27932236 - 27932279
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatta 360  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||    
T  27932236 acaccgctaataatttgagaaaattacataattcagtgtaatta 27932279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 4344743 - 4344789
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattattg 363  Q
    |||||||||||||||||| ||||| |||| |||||||||||| ||||    
T  4344743 acaccgataataatttgaaaaaatgacataattcagtgtaatcattg 4344789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 5468034 - 5467992
Alignment:
Q  319 accgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||| ||||| |||| |||||||||||||||    
T  5468034 accgataataatttgataaaatcacataattcagtgtaattat 5467992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 21194171 - 21194137
Alignment:
Q  327 taatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||| ||||||||||||||||||||    
T  21194171 taatttgagaaaatcacatcattcagtgtaattat 21194137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 2577238 - 2577197
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| |||| ||| ||||||||    
T  2577238 acaccgataataatttgagaaaatgacataatttagtgtaat 2577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 6471940 - 6471903
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  6471940 taataatttgagaaaatcacataattcagtgtaattat 6471903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 12264888 - 12264843
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| |||| |||||||||||| |||| |||||||||||||||    
T  12264888 aacaccgctaattatttgagaaaattacatgattcagtgtaattat 12264843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 30502447 - 30502402
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| || | |||||||||||||||    
T  30502447 aacaccgctaataatttgagaaaatcacttaattcagtgtaattat 30502402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 30542790 - 30542745
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||||||||||||||||| || | |||||||||||||||    
T  30542790 aacaccgctaataatttgagaaaatcacttaattcagtgtaattat 30542745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 3966504 - 3966548
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||  |||||||||||||||    
T  3966504 acaccgctaataatttgagaaaatcacacaattcagtgtaattat 3966548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 18607150 - 18607114
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  18607150 gataataatttgagaaaataacataattcaatgtaat 18607114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 24906360 - 24906316
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||    
T  24906360 aacacagataataatttgaaaaaatgacataattcagtgtaatta 24906316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 32630793 - 32630749
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||||||||||| | || ||||| |||||||||    
T  32630793 acaccgataataatttgagaaaattatataattcaatgtaattat 32630749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 36838544 - 36838588
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgtaattat 36838588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 38749621 - 38749577
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||||| ||||| |||| ||||| |||||||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaattat 38749577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 99894 - 99938
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||    
T  99894 acaccgataataattttagaaaataacataattcaatgtaattat 99938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 29787427 - 29787383
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  29787427 acaccgctaataatttgagaaaatcacataattcagtgtaattat 29787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 17307904 - 17307938
Alignment:
Q  327 taatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||||| |||||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattat 17307938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 32308121 - 32308163
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatt 359  Q
    |||||| ||||||||||||||||| |||| |||||||||||||    
T  32308121 acaccgctaataatttgagaaaatcacataattcagtgtaatt 32308163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 2424622 - 2424659
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  2424622 taataatttgagaaaatcacataattcagtgtaattat 2424659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 5835255 - 5835292
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  5835255 taatagtttgagaaaataacataattcagtgtaattat 5835292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 7328742 - 7328705
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  7328742 taataatttgagaaaataacataatttagtgtaattat 7328705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 12278835 - 12278880
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||| ||||||||||| ||||||| |||| |||||||||||||||    
T  12278835 aacactgataataatttaagaaaatgacataattcagtgtaattat 12278880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 38134464 - 38134423
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaat 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 1433455 - 1433499
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| ||||||||  ||||||||||    
T  1433455 acaccgttaataatttgagaaaatcacatcatttggtgtaattat 1433499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 16341497 - 16341541
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||||    
T  16341497 acactgataataatttgagaaaatcacataattaagtgtaattat 16341541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 18233656 - 18233612
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| |||| |||||||||||||| |||| |||||||||||||||    
T  18233656 acacagatagtaatttgagaaaatgacataattcagtgtaattat 18233612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 20549792 - 20549836
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| || | |||||||||||||||    
T  20549792 acaccgctaataatttgagaaaatcacgtaattcagtgtaattat 20549836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 21880160 - 21880196
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaatta 21880196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 27945049 - 27945085
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  27945049 taataatttgagaaaattacataattcagtgtaatta 27945085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 30813820 - 30813856
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  30813820 taataatttgagaaaattacataattcagtgtaatta 30813856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 43249994 - 43250038
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| || ||||||||||||    
T  43249994 acacggataataatttgagaaaatgacataatacagtgtaattat 43250038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 8423776 - 8423732
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  8423776 acaccgctaataatttgagaaaatcacataattcagtgtaattat 8423732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 16402269 - 16402225
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| |||||||||||||||||||||||| || ||||||||||||    
T  16402269 acacggataataatttgagaaaataacatgatacagtgtaattat 16402225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 22440658 - 22440614
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  22440658 acaccgttaataatttgagaaaatcacataattcagtgtaattat 22440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 24343508 - 24343552
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||    
T  24343508 acacggataataatttgagaaaattacataattcagtgtaattat 24343552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 32910552 - 32910596
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||    
T  32910552 acacggataataatttgagaaaatgacataattcagtgtaattat 32910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 44797021 - 44796977
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaatta 360  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  44797021 aacaccgacaataatttgagaaaataacataattcaatgtaatta 44796977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 903924 - 903967
Alignment:
Q  318 caccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||    
T  903924 caccgttaataatttgagaaaatcacataattcagtgtaattat 903967  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 19230362 - 19230323
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaattat 19230323  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 7012067 - 7012105
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgt 355  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  7012067 acaccgataataatttgagaaaatgacataattcagtgt 7012105  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 16189709 - 16189754
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||| ||| ||||||||||||| |||| |||||||||||||||    
T  16189709 aacaccgctaaaaatttgagaaaatcacataattcagtgtaattat 16189754  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 18513299 - 18513258
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  18513299 acaccgataataatttgagaaaatgacataattcaatgtaat 18513258  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 20743336 - 20743295
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||| ||||||||||||||||||| |||| ||||||||||||    
T  20743336 acacggataataatttgagaaaatgacataattcagtgtaat 20743295  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 36635332 - 36635369
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  36635332 taataatttgagaaaatcacataattcagtgtaattat 36635369  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 46180986 - 46180953
Alignment:
Q  325 aataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||||||||||||||| ||||||||||||    
T  46180986 aataatttgagaaaataacataattcagtgtaat 46180953  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 7728017 - 7727973
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||||| |||||||||| |||| ||||||| |||||||    
T  7728017 acaccgataataagttgagaaaatgacatgattcagtataattat 7727973  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 40613451 - 40613495
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||||| ||||||||||| |||| |||||||||||||||    
T  40613451 acaccgctaatattttgagaaaatcacataattcagtgtaattat 40613495  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 92808 - 92851
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatta 360  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||    
T  92808 acaccgctaataatttgagaaaattacataattcagtgtaatta 92851  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 63771 - 63817
Alignment:
Q  314 ctaacaccgataataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||| ||||||||||||||||| |||| |||||||| |||||    
T  63771 ctaacaccgctaataatttgagaaaattacataattcagtgcaatta 63817  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 70286 - 70323
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaattat 361  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattat 70323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 44583 - 44539
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||| ||| ||||||||||||| |||| |||||||||||||||    
T  44583 acaccgctaaaaatttgagaaaatcacataattcagtgtaattat 44539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 33414 - 33378
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaatta 360  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  33414 taataatttgaaaaaataacataattcagtgtaatta 33378  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 53189 - 53225
Alignment:
Q  325 aataatttgagaaaataacatcattcagtgtaattat 361  Q
    |||||||||||||||| |||| |||||||||||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattat 53225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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