View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0449_high_1 (Length: 493)
Name: NF0449_high_1
Description: NF0449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0449_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 47 - 483
Target Start/End: Complemental strand, 42010418 - 42009982
Alignment:
| Q |
47 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacagtttctgctgc |
146 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgctgc |
42010319 |
T |
|
| Q |
147 |
tttcttatgatctctctcgcgccaccttctaagctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgct |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010318 |
tttcttatgatctctctcgcgccaccttctaagctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgct |
42010219 |
T |
|
| Q |
247 |
ttctttatatcctcaatttccatctgagttgcctctaactttatgagagcctcattttcactgagctttgcagcttcaatatgtgctgtcgcagccgcca |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010218 |
ttctttatatcctcaatttccatctgagttgcctctaactttatgagagcctcattttcactgagctttgcagcttcaatatgtgctgtcgcagccgcca |
42010119 |
T |
|
| Q |
347 |
cttttgcactcgctagtttatcacactcctcagctctgcggtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttga |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42010118 |
cttttgcactcgctagtttatcacactcctcagctctgcggtttaaggactcatattcctccctcgagatggtaattctagcaccggattcagtcgttga |
42010019 |
T |
|
| Q |
447 |
agcgtgagcagtattattcctttcagataagtctctg |
483 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42010018 |
agcgtgagcagtattattcctttcagataagtctctg |
42009982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 47 - 483
Target Start/End: Complemental strand, 1245756 - 1245320
Alignment:
| Q |
47 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacagtttctgctgc |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgctgc |
1245657 |
T |
|
| Q |
147 |
tttcttatgatctctctcgcgccaccttctaagctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1245656 |
tttcttatgatctctctcgcgccaccttctaagctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgct |
1245557 |
T |
|
| Q |
247 |
ttctttatatcctcaatttccatctgagttgcctctaactttatgagagcctcattttcactgagctttgcagcttcaatatgtgctgtcgcagccgcca |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245556 |
ttctttatatcctcaatttccatctgagttgcctctaactttatgagagcctcattttcactgagctttgcagcttcaatatgtgctgtcgcagccgcca |
1245457 |
T |
|
| Q |
347 |
cttttgcactcgctagtttatcacactcctcagctctgcggtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttga |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245456 |
cttttgcactcgctagtttatcacactcctcagctctgcagtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttga |
1245357 |
T |
|
| Q |
447 |
agcgtgagcagtattattcctttcagataagtctctg |
483 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1245356 |
agcgtgagcagtattattcctttcggataagtctctg |
1245320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 23788243 - 23788166
Alignment:
| Q |
211 |
gccatctcggcctttttcaaggcctcatgcgttgctttctttatatcctcaatttccatctgagttgcctctaacttt |
288 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| | || ||||| ||||| ||| ||||||||||||| |||||| |
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|
| T |
23788243 |
gccatctcggcctttttcaaggcctcctgtgttgcagttttcatatcttcaatctccttctgagttgcctccaacttt |
23788166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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