View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0449_low_1 (Length: 539)

Name: NF0449_low_1
Description: NF0449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0449_low_1
NF0449_low_1
[»] chr6 (29 HSPs)
chr6 (210-454)||(33042498-33042747)
chr6 (29-137)||(479185-479293)
chr6 (25-147)||(8437574-8437696)
chr6 (25-149)||(1101186-1101310)
chr6 (25-149)||(28890910-28891034)
chr6 (25-148)||(13276559-13276682)
chr6 (34-129)||(17156242-17156337)
chr6 (24-147)||(32187285-32187408)
chr6 (81-164)||(33042765-33042848)
chr6 (45-151)||(4111406-4111512)
chr6 (45-147)||(12296948-12297050)
chr6 (25-130)||(4229833-4229938)
chr6 (24-129)||(34858146-34858251)
chr6 (24-147)||(3027285-3027408)
chr6 (25-148)||(4174220-4174343)
chr6 (18-129)||(24011949-24012060)
chr6 (45-115)||(27613307-27613377)
chr6 (30-147)||(1558606-1558723)
chr6 (30-147)||(3729059-3729176)
chr6 (24-148)||(13041696-13041820)
chr6 (25-147)||(5153316-5153438)
chr6 (24-90)||(7458777-7458843)
chr6 (69-147)||(11982469-11982547)
chr6 (45-137)||(31803138-31803230)
chr6 (45-115)||(1449865-1449935)
chr6 (37-115)||(32158050-32158127)
chr6 (31-104)||(27797734-27797807)
chr6 (39-115)||(14500032-14500108)
chr6 (20-78)||(23645897-23645955)
[»] chr3 (43 HSPs)
chr3 (24-149)||(26994762-26994887)
chr3 (25-147)||(4481649-4481771)
chr3 (37-147)||(39889321-39889431)
chr3 (25-147)||(28793648-28793770)
chr3 (24-137)||(14751814-14751927)
chr3 (24-129)||(41129724-41129829)
chr3 (25-149)||(1782688-1782812)
chr3 (25-149)||(40000783-40000907)
chr3 (24-147)||(4357025-4357148)
chr3 (18-147)||(24540973-24541102)
chr3 (45-149)||(39391048-39391152)
chr3 (24-147)||(20647798-20647921)
chr3 (30-129)||(46136371-46136470)
chr3 (45-147)||(19420962-19421064)
chr3 (25-147)||(51302361-51302483)
chr3 (25-149)||(9338264-9338388)
chr3 (25-129)||(33370428-33370532)
chr3 (24-100)||(35761510-35761586)
chr3 (25-129)||(40489049-40489153)
chr3 (25-147)||(47597088-47597210)
chr3 (18-147)||(13596161-13596290)
chr3 (24-129)||(24133774-24133879)
chr3 (30-147)||(33249412-33249529)
chr3 (24-148)||(43010236-43010361)
chr3 (25-129)||(42294127-42294231)
chr3 (29-141)||(52274339-52274451)
chr3 (24-103)||(24120285-24120364)
chr3 (24-115)||(31405921-31406012)
chr3 (45-147)||(29076864-29076966)
chr3 (45-115)||(34636369-34636439)
chr3 (72-148)||(33069474-33069550)
chr3 (25-148)||(34705313-34705436)
chr3 (25-115)||(25593675-25593765)
chr3 (29-115)||(47844527-47844613)
chr3 (30-107)||(50638523-50638600)
chr3 (25-129)||(34422670-34422774)
chr3 (25-129)||(52174809-52174913)
chr3 (24-70)||(26020353-26020399)
chr3 (25-147)||(54447581-54447703)
chr3 (45-147)||(55008096-55008193)
chr3 (25-147)||(22523399-22523525)
chr3 (45-129)||(54650459-54650543)
chr3 (45-147)||(46067991-46068088)
[»] chr8 (29 HSPs)
chr8 (25-147)||(40680349-40680471)
chr8 (25-147)||(39506631-39506753)
chr8 (24-147)||(38600828-38600951)
chr8 (24-147)||(14921366-14921489)
chr8 (24-115)||(35056211-35056302)
chr8 (25-147)||(24580441-24580563)
chr8 (25-147)||(16364983-16365105)
chr8 (45-129)||(12615138-12615222)
chr8 (45-137)||(23950298-23950390)
chr8 (25-128)||(10921087-10921190)
chr8 (25-147)||(26106378-26106499)
chr8 (37-149)||(7383185-7383297)
chr8 (24-115)||(8000048-8000139)
chr8 (25-148)||(12637984-12638107)
chr8 (25-95)||(4376943-4377013)
chr8 (25-147)||(26241267-26241389)
chr8 (49-147)||(32551599-32551697)
chr8 (40-149)||(44710075-44710184)
chr8 (25-149)||(7960563-7960686)
chr8 (45-149)||(36684670-36684774)
chr8 (24-147)||(11989029-11989152)
chr8 (37-115)||(32983215-32983293)
chr8 (45-115)||(36054665-36054735)
chr8 (45-128)||(33303803-33303886)
chr8 (28-113)||(31519173-31519258)
chr8 (39-115)||(10954371-10954447)
chr8 (39-115)||(10962376-10962452)
chr8 (60-147)||(44755544-44755631)
chr8 (94-144)||(14540997-14541047)
[»] chr4 (35 HSPs)
chr4 (28-148)||(48659319-48659439)
chr4 (25-148)||(17981301-17981424)
chr4 (25-147)||(8753789-8753911)
chr4 (24-149)||(29590472-29590597)
chr4 (45-148)||(40730460-40730563)
chr4 (45-147)||(48826000-48826102)
chr4 (25-150)||(37010987-37011111)
chr4 (25-149)||(34432991-34433115)
chr4 (45-129)||(47691596-47691680)
chr4 (24-147)||(4422060-4422183)
chr4 (30-129)||(48801244-48801343)
chr4 (25-115)||(20039657-20039747)
chr4 (45-147)||(38308095-38308197)
chr4 (25-115)||(38973614-38973704)
chr4 (25-147)||(48089794-48089916)
chr4 (24-148)||(10010869-10010993)
chr4 (24-148)||(10018010-10018134)
chr4 (24-115)||(46903894-46903985)
chr4 (26-147)||(32468275-32468397)
chr4 (25-130)||(12582116-12582221)
chr4 (37-141)||(20392939-20393044)
chr4 (30-115)||(31842878-31842963)
chr4 (59-149)||(11845391-11845481)
chr4 (45-147)||(16711743-16711845)
chr4 (45-127)||(35041799-35041881)
chr4 (30-147)||(9627486-9627603)
chr4 (39-147)||(36488771-36488879)
chr4 (45-129)||(41487467-41487551)
chr4 (25-72)||(20484355-20484402)
chr4 (24-129)||(49389450-49389555)
chr4 (36-147)||(22270410-22270521)
chr4 (45-115)||(23106406-23106476)
chr4 (45-147)||(52225667-52225769)
chr4 (30-115)||(50637187-50637272)
chr4 (313-349)||(29298989-29299025)
[»] chr1 (48 HSPs)
chr1 (25-149)||(42650038-42650162)
chr1 (37-148)||(44912596-44912707)
chr1 (37-147)||(19507057-19507167)
chr1 (24-147)||(10805017-10805140)
chr1 (24-129)||(42384218-42384323)
chr1 (24-151)||(15321899-15322026)
chr1 (24-147)||(39919604-39919727)
chr1 (25-147)||(6305024-6305146)
chr1 (24-134)||(17386311-17386421)
chr1 (25-147)||(18342558-18342680)
chr1 (37-147)||(26257390-26257500)
chr1 (24-147)||(34050008-34050133)
chr1 (25-147)||(52222725-52222847)
chr1 (37-146)||(44779491-44779600)
chr1 (25-137)||(8417237-8417349)
chr1 (25-147)||(12298134-12298256)
chr1 (25-147)||(13077294-13077416)
chr1 (45-147)||(18353088-18353190)
chr1 (30-107)||(46313665-46313742)
chr1 (45-149)||(39860484-39860588)
chr1 (24-115)||(10312022-10312113)
chr1 (24-147)||(38672133-38672256)
chr1 (37-147)||(16452385-16452495)
chr1 (37-147)||(16461537-16461647)
chr1 (25-147)||(17805813-17805935)
chr1 (30-147)||(5499967-5500084)
chr1 (45-137)||(34083979-34084071)
chr1 (25-115)||(13253276-13253365)
chr1 (24-146)||(15849814-15849936)
chr1 (25-147)||(19708975-19709097)
chr1 (45-147)||(24038241-24038343)
chr1 (31-129)||(31493450-31493548)
chr1 (25-115)||(46846790-46846880)
chr1 (30-147)||(6889516-6889633)
chr1 (30-147)||(6891362-6891479)
chr1 (45-149)||(18437098-18437202)
chr1 (45-149)||(18447955-18448059)
chr1 (45-149)||(18453048-18453152)
chr1 (24-147)||(23555745-23555869)
chr1 (37-129)||(27090835-27090927)
chr1 (45-137)||(32239310-32239402)
chr1 (25-147)||(33785194-33785316)
chr1 (25-78)||(5506903-5506956)
chr1 (30-115)||(7109590-7109675)
chr1 (30-129)||(29523073-29523173)
chr1 (60-115)||(3831543-3831598)
chr1 (30-104)||(31316073-31316147)
chr1 (25-115)||(47367500-47367589)
[»] chr5 (28 HSPs)
chr5 (25-147)||(27332499-27332621)
chr5 (30-148)||(14949531-14949649)
chr5 (29-137)||(370166-370274)
chr5 (25-147)||(18158378-18158500)
chr5 (24-129)||(13916771-13916875)
chr5 (24-148)||(11877461-11877585)
chr5 (24-147)||(10017763-10017886)
chr5 (45-140)||(12880466-12880561)
chr5 (25-147)||(40083983-40084105)
chr5 (29-149)||(4049447-4049567)
chr5 (24-147)||(6644158-6644281)
chr5 (26-129)||(17870044-17870147)
chr5 (25-150)||(9163425-9163550)
chr5 (24-104)||(3881072-3881152)
chr5 (24-115)||(34855347-34855438)
chr5 (25-147)||(38254693-38254815)
chr5 (24-115)||(36113157-36113248)
chr5 (45-147)||(31271455-31271557)
chr5 (35-147)||(858635-858748)
chr5 (30-115)||(7079022-7079107)
chr5 (30-115)||(27054504-27054589)
chr5 (59-147)||(491253-491341)
chr5 (24-148)||(42062307-42062431)
chr5 (18-149)||(10931616-10931747)
chr5 (37-137)||(15397567-15397667)
chr5 (45-115)||(7035194-7035264)
chr5 (31-115)||(42288510-42288594)
chr5 (101-151)||(15678224-15678274)
[»] scaffold0275 (1 HSPs)
scaffold0275 (4-147)||(9151-9294)
[»] chr2 (33 HSPs)
chr2 (25-148)||(2995045-2995168)
chr2 (24-147)||(35959329-35959452)
chr2 (28-150)||(2182724-2182846)
chr2 (25-147)||(13029108-13029230)
chr2 (24-149)||(34726326-34726451)
chr2 (26-137)||(6419960-6420071)
chr2 (45-147)||(21198158-21198260)
chr2 (30-147)||(26260273-26260390)
chr2 (24-137)||(31452883-31452996)
chr2 (59-148)||(36985416-36985505)
chr2 (24-107)||(6283403-6283486)
chr2 (25-148)||(29768289-29768411)
chr2 (40-147)||(38086611-38086718)
chr2 (37-147)||(6431516-6431626)
chr2 (24-150)||(22439914-22440040)
chr2 (25-115)||(25879748-25879838)
chr2 (37-147)||(44092822-44092932)
chr2 (24-121)||(38213422-38213519)
chr2 (25-150)||(40737797-40737922)
chr2 (45-137)||(29557425-29557517)
chr2 (61-147)||(6283332-6283418)
chr2 (30-147)||(12033832-12033948)
chr2 (30-107)||(42076989-42077066)
chr2 (34-129)||(7298844-7298939)
chr2 (24-115)||(7592544-7592635)
chr2 (28-89)||(15899706-15899767)
chr2 (35-112)||(43639008-43639085)
chr2 (45-129)||(5936793-5936877)
chr2 (39-129)||(2611295-2611385)
chr2 (45-147)||(43616305-43616407)
chr2 (45-115)||(43999655-43999725)
chr2 (22-66)||(17740525-17740569)
chr2 (53-137)||(38448062-38448146)
[»] scaffold0886 (1 HSPs)
scaffold0886 (25-115)||(1789-1879)
[»] chr7 (36 HSPs)
chr7 (30-147)||(41902845-41902962)
chr7 (24-137)||(33450249-33450362)
chr7 (25-149)||(14776185-14776309)
chr7 (24-147)||(31377365-31377488)
chr7 (45-147)||(2732290-2732392)
chr7 (24-148)||(34521245-34521369)
chr7 (25-149)||(41892121-41892245)
chr7 (24-147)||(44848016-44848139)
chr7 (25-147)||(2941131-2941253)
chr7 (25-147)||(3356960-3357082)
chr7 (25-147)||(21806500-21806622)
chr7 (28-137)||(10227868-10227977)
chr7 (28-137)||(34002779-34002888)
chr7 (24-148)||(46191669-46191793)
chr7 (30-147)||(15757652-15757769)
chr7 (25-137)||(12419156-12419267)
chr7 (45-129)||(31673556-31673640)
chr7 (30-149)||(1411529-1411648)
chr7 (24-147)||(11410521-11410644)
chr7 (25-147)||(15943121-15943243)
chr7 (25-115)||(41399713-41399803)
chr7 (24-149)||(2196042-2196167)
chr7 (30-147)||(23671153-23671270)
chr7 (24-129)||(44410046-44410151)
chr7 (45-129)||(18533386-18533470)
chr7 (25-129)||(21441965-21442069)
chr7 (25-137)||(43596177-43596289)
chr7 (25-103)||(48214107-48214185)
chr7 (24-137)||(13391064-13391177)
chr7 (25-121)||(5667102-5667198)
chr7 (24-71)||(41631568-41631615)
chr7 (31-101)||(28489286-28489356)
chr7 (33-67)||(43341259-43341293)
chr7 (24-147)||(27595638-27595760)
chr7 (24-115)||(32584850-32584941)
chr7 (62-115)||(8485948-8486001)
[»] scaffold0037 (1 HSPs)
scaffold0037 (45-147)||(81362-81464)
[»] scaffold0129 (1 HSPs)
scaffold0129 (25-147)||(40900-41022)
[»] scaffold0065 (1 HSPs)
scaffold0065 (24-115)||(40006-40097)
[»] scaffold0422 (1 HSPs)
scaffold0422 (24-78)||(10676-10730)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 210 - 454
Target Start/End: Complemental strand, 33042747 - 33042498
Alignment:
Q  210 tagcacgtttggagattttgttttccaccctaccaatttcttgtaagcatatgaattcctcattttgacactgttagaattttataatctgcaccatttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  33042747 tagcacgtttggagattttgttttccaccctaccaatttcttgtaagcatatgaatttctcattttgacactgtttgaattttataatctgaaccatttt 33042648  T
Q  310 tactatattttagattatataatttgaatctcctaaaaatggtaaatagtaagaatatgataataatgaagcattttgaagaatggagttattagaatag 409  Q
    ||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33042647 tactatattttggattattcaatttaaatctcctaaaaatggtaaatagtaagaatatgataataatgaagcattttgaagaatggagttattaaaatag 33042548  T
Q  410 ctattttt-----tgtcttttgaaacttattaactcattttgatgatgtc 454  Q
    ||||||||     |||||||||||||||||||||||||||||||||||||    
T  33042547 ctatttttttttatgtcttttgaaacttattaactcattttgatgatgtc 33042498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 479185 - 479293
Alignment:
Q  29 tcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcc 128  Q
    ||||||| ||||||||||||||||||||  |||||||||| || |||||||||||||||||| |||| ||||||||||| |||||||  |||||||||||    
T  479185 tcaggcctagaaaaacggcctatgatagaccataggccagactcaggcctgtaaattttttcgtaggccaggctcaggcctatcaaagcctggtctggcc 479284  T
Q  129 tgacctatt 137  Q
    |||||||||    
T  479285 tgacctatt 479293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 8437574 - 8437696
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||| ||||||| ||||||| ||||| ||    
T  8437574 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccagactcaggcctatcaaagtctggcct 8437673  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  8437674 ggcctggcctattcccaacccta 8437696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 1101310 - 1101186
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  1101310 caggccaggcctaaaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 1101211  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  1101210 ggcctggcctattcccaaccctaat 1101186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 28890910 - 28891034
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| ||| |||||| |||| ||||||||||| |||||||  |||| ||    
T  28890910 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcct 28891009  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  28891010 ggcctggcctattcccaaccctaat 28891034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 13276682 - 13276559
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| ||| |||||| |||| ||||||||||| |||||||  |||| ||    
T  13276682 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcct 13276583  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    |||||| |||||| ||| ||||||    
T  13276582 ggcctggcctattcccaaccctaa 13276559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 17156337 - 17156242
Alignment:
Q  34 ccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||||||||||||| ||||| || ||||||| || |||| ||||||||||||| |||| ||||||||||| |||||||| |||| |||||||    
T  17156337 ccaagaaaaacggcctataataggccacaggccagactcaggcttgtaaattttttcgtaggccaggctcaggcctatcaaaacctggcctggcct 17156242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 32187285 - 32187408
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||   ||| |    
T  32187285 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcatggcc 32187384  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  32187385 tggcctggcctattcccaccccta 32187408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 33042848 - 33042765
Alignment:
Q  81 aaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatccctaataagagtgtagtaatc 164  Q
    |||||||||| |||||||||||||||| |||||||| ||||| ||||||| |||||| ||||||||| | ||||||||||||||    
T  33042848 aaattttttcgtaggtcaggctcaggcctatcaaaacctggtttggcctggcctattcccatccctagtgagagtgtagtaatc 33042765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 4111406 - 4111512
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||||||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  4111406 ggcctatgaaaggtcataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 4111505  T
Q  145 ctaataa 151  Q
    |||||||    
T  4111506 ctaataa 4111512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 12296948 - 12297050
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||| |||| ||| ||||| | ||||||| ||||| |||||||| |||||| ||| ||    
T  12296948 ggcctatgaaaggccataggccaggcttaggcctgcaaattttttcgtaggccagactcagacctatcaaagtctggcctggcctggcctattcccaacc 12297047  T
Q  145 cta 147  Q
    |||    
T  12297048 cta 12297050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 4229833 - 4229938
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  4229833 caggtcaggcctagaaaaacggcctatgataggccatagaccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 4229932  T
Q  125 ggcctg 130  Q
    ||||||    
T  4229933 ggcctg 4229938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 34858251 - 34858146
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | ||||||| |||| ||||||||| | |||||||  |||| |    
T  34858251 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttttttcgtaggccaggctcagacctatcaaagcctggcc 34858152  T
Q  124 tggcct 129  Q
    ||||||    
T  34858151 tggcct 34858146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 3027285 - 3027408
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    |||||||||||||| | ||  ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| |    
T  3027285 tcaggtcaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcc 3027384  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  3027385 tggcctggcctattcccaacccta 3027408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 4174220 - 4174343
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||| |||| ||| | || |||  |||| ||||||||||| |||||||  ||||  |    
T  4174220 caggtcaggcctagaaaaacggcctatgataggccgtaggccaggctcaggcttgtgatttattttgtaggccaggctcaggcctatcaaagcctggcat 4174319  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    |||||| |||||| ||| ||||||    
T  4174320 ggcctggcctattcccacccctaa 4174343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 24012060 - 24011949
Alignment:
Q  18 aggctttcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaat 117  Q
    ||||||||||| |||||||| | ||  ||||||||| ||| |||||||||||||  |||||| |||||||||| |||| ||||||||||| |||||||      
T  24012060 aggctttcaggccaggccaaaataataggcctatgaaaggccataggccaggctcgggcctgcaaattttttcgtaggccaggctcaggcctatcaaagc 24011961  T
Q  118 ctggtctggcct 129  Q
    |||| |||||||    
T  24011960 ctggcctggcct 24011949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 27613377 - 27613307
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||    
T  27613377 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggtcaggctcaggcctatcaaa 27613307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 1558723 - 1558606
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||| | ||||||||||||||||| | ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||  |||||||    
T  1558723 caggcctataaaaacggcctatgataagccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctgacctggcct 1558624  T
Q  130 gacctatttccatcccta 147  Q
    |||||||| ||| |||||    
T  1558623 gacctattcccaccccta 1558606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 3729059 - 3729176
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||||||||| | | | ||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||    
T  3729059 caggccaaaaaaataggcctatgaaatgccgtaggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcct 3729158  T
Q  130 gacctatttccatcccta 147  Q
    | |||||| ||| |||||    
T  3729159 ggcctattcccaacccta 3729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 13041696 - 13041820
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||||||| || ||||||||||||||||||||| |||||||||| |||| || ||| | || |||| |||| ||| ||||||| |||||||  || | |    
T  13041696 tcaggtcagacctagaaaaacggcctatgataggccataggccagacttaagcttgtgatttatttcgtaggccagactcaggcctatcaaagcctagcc 13041795  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    ||||||| |||||| ||| ||||||    
T  13041796 tggcctggcctattcccacccctaa 13041820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 5153438 - 5153316
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| | ||||| ||| |||||| |||| ||||||||| | |||||||  |||| ||    
T  5153438 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaagcctgcaaaatttttcgtaggccaggctcagacttatcaaagcctggcct 5153339  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  5153338 ggcctggcctattcccaacccta 5153316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 7458843 - 7458777
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttc 90  Q
    ||||| ||| ||||||||||||| |||||||||| |||||||||||||||||| |||| | ||||||    
T  7458843 tcaggccagaccaagaaaaacggtctatgataggccataggccaggcttaggcttgtataatttttc 7458777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 11982469 - 11982547
Alignment:
Q  69 gcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcccta 147  Q
    |||||||||||||||||||||| || ||||||||||| | ||| ||| ||||| |||||||| |||||| ||| |||||    
T  11982469 gcttaggcctgtaaattttttcgtaagtcaggctcagacctattaaagtctggcctggcctggcctattcccaccccta 11982547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 31803138 - 31803230
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatt 137  Q
    ||||||||| ||| ||||||||||||| || |||| |||||||||| ||||||||||||| |  |||||||  |||  |||| ||||||||||    
T  31803138 ggcctatgaaaggccataggccaggctcagacctgcaaattttttcgtaggtcaggctcaagtctatcaaagcctgacctggtctgacctatt 31803230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 1449865 - 1449935
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| |||||||||| || |||||||||||||||||| |||  ||| ||||||| |||||||    
T  1449865 ggcctatgaaaggccataggccagactcaggcctgtaaattttttcgtagaccagactcaggcctatcaaa 1449935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 32158127 - 32158050
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||||||||||||||| ||||||||||||| || | ||||||   |||| ||||||| |||||||| |||||||    
T  32158127 agaaaaacggcctatgataggccataggccaggctcagacttgtaaaaaatttcgtaggtca-gctcaggcctatcaaa 32158050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 27797734 - 27797807
Alignment:
Q  31 aggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctca 104  Q
    ||||||||||||||||  ||||||||||||||| |||| || | || ||||||||||||| |||  ||||||||    
T  27797734 aggccaagaaaaacggtatatgataggtcatagaccagactcaagcttgtaaattttttcgtagaccaggctca 27797807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 14500108 - 14500032
Alignment:
Q  39 aaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||||||||||||| |||||| ||| || |||| ||| | || |||| |||| ||||||||||| |||||||    
T  14500108 aaaaacggcctatgataggccataggacagactcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaa 14500032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 23645955 - 23645897
Alignment:
Q  20 gctttcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcct 78  Q
    ||||||||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||    
T  23645955 gctttcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcct 23645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 26994762 - 26994887
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| ||||| |    
T  26994762 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcctgtaaattttttcgtaggccaggctcaggcctatcaaagtctggcc 26994861  T
Q  124 tggcctgacctatttccatccctaat 149  Q
    ||| ||| |||||| ||| |||||||    
T  26994862 tggtctggcctattcccacccctaat 26994887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 4481771 - 4481649
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||| ||||||||||| | |||||  |||| ||    
T  4481771 caggccaggccaagaaaaacggcctatgataggccataggccaggcttaggcttgtatattttttcgtaggccaggctcaggcctttcaaagcctggcct 4481672  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  4481671 ggcctggcctattcccaacccta 4481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 39889431 - 39889321
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||  ||||||||| ||| |||||    
T  39889431 agaaaaacggcctatgataggccataggccaggctcaggcctgtaaattttttcgtaggccaggctcaggcctatcaaagcctggtctggtctggcctat 39889332  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  39889331 tcccaccccta 39889321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 28793770 - 28793648
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  || |||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| ||    
T  28793770 caggccaggccaaaaaaataggtctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcct 28793671  T
Q  125 ggcctgacctatttccatcccta 147  Q
    ||||||||||||||||| |||||    
T  28793670 ggcctgacctatttccaacccta 28793648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 14751927 - 14751814
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    |||||||||||||||||||||||||||| ||||| || ||| ||| || |||| ||||||||||||| |||||||||||||||| |||| ||| |||| |    
T  14751927 tcaggtcaggccaagaaaaacggcctataataggccacaggacagactcaggcttgtaaattttttcgtaggtcaggctcaggcctatctaaacctggcc 14751828  T
Q  124 tggcctgacctatt 137  Q
    || |||| ||||||    
T  14751827 tgacctggcctatt 14751814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 41129724 - 41129829
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| |||| ||||||||||| |||||||  |||| |    
T  41129724 tcaggccaggccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 41129823  T
Q  124 tggcct 129  Q
    ||||||    
T  41129824 tggcct 41129829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 1782688 - 1782812
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||||||||||| ||| |||||| |||| ||||||||||| |||||||  |||| ||    
T  1782688 caggccaggccaaaaaaataggcctatgaaaggccataggccaggcttaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcct 1782787  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  1782788 ggcctggcctattcccaaccctaat 1782812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 40000783 - 40000907
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| ||    
T  40000783 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcct 40000882  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  40000883 ggcctggcctattcccaaccctaat 40000907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 4357025 - 4357148
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||||||||||||| ||| ||||  || |||| |||||||||| ||||||||||||| |||| ||||||||||| |||||||  |||| |    
T  4357025 tcaggccaggccaagaaaaacggcttataatagaccacaggctaggcttaggcttgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 4357124  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  4357125 tggcctggcctattcccaccccta 4357148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 24540973 - 24541102
Alignment:
Q  18 aggctttcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaat 117  Q
    ||||||||||| ||| |||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||      
T  24540973 aggctttcaggccagaccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagc 24541072  T
Q  118 ctggtctggcctgacctatttccatcccta 147  Q
    |||| ||||| || |||||| ||| |||||    
T  24541073 ctggcctggcttggcctattcccaacccta 24541102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 39391152 - 39391048
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  39391152 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 39391053  T
Q  145 ctaat 149  Q
    |||||    
T  39391052 ctaat 39391048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 20647798 - 20647921
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| ||||  ||||||||| ||| ||||||||||||| || |||| |||  ||||| |||| ||||||||||| |||||||  |||| |    
T  20647798 tcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcagacctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcc 20647897  T
Q  124 tggcctgacctatttccatcccta 147  Q
    |||||||||||||||||| |||||    
T  20647898 tggcctgacctatttccaacccta 20647921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 46136371 - 46136470
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| |||| ||| ||||||| |||||||  |||| |||||||    
T  46136371 caggccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccagactcaggcctatcaaagcctggcctggcct 46136470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 19421064 - 19420962
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  19421064 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 19420965  T
Q  145 cta 147  Q
    |||    
T  19420964 cta 19420962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 51302483 - 51302361
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  51302483 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 51302384  T
Q  125 ggcctgacctatttccatcccta 147  Q
     ||||| |||||| ||| |||||    
T  51302383 agcctggcctattcccaccccta 51302361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 9338264 - 9338388
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||| ||||||||||| ||||||||||||| |||| ||| | || ||||  ||| ||||||||||| |||||||  |||| ||    
T  9338264 caggccaggcctagaaaaacgacctatgataggccataggccaggctcaggcttgtgatttatttcgcaggccaggctcaggcctatcaaagcctggcct 9338363  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  9338364 ggcctggcctattcccaaccctaat 9338388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 33370532 - 33370428
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||||||||||||||||||||||||| |||||||||| || | ||| ||||||| |||||||  |||| ||    
T  33370532 caggccaggccaaaaaaataggcctatgaaaggtcataggccaggcttaggcctgcaaattttttcgtatgccagactcaggcctatcaaagcctggcct 33370433  T
Q  125 ggcct 129  Q
    |||||    
T  33370432 ggcct 33370428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 35761510 - 35761586
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcagg 100  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| |||| ||||    
T  35761510 tcaggccaggccaagaaaaacggcctatgataggccataggtcagacttaggcttgtaaattttttcgtagggcagg 35761586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 40489049 - 40489153
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||||| ||||   |||||||| ||| ||||||||||||| ||||||| |||||||||| || | ||||||||||| |||||||  |||||||    
T  40489049 caggtcaggccaaaaaaataagcctatgaaaggccataggccaggctcaggcctggaaattttttcgtaagccaggctcaggcctatcaaagcctggtct 40489148  T
Q  125 ggcct 129  Q
    |||||    
T  40489149 ggcct 40489153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 47597088 - 47597210
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||||||    
T  47597088 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggtct 47597187  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  47597188 ggcctggcctattcccaacccta 47597210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 13596290 - 13596161
Alignment:
Q  18 aggctttcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaat 117  Q
    ||||||||||| ||||||||  |||  ||||||||| ||| ||||  ||||||| |||| || |||||||||| |||| ||||||||||| |||||||      
T  13596290 aggctttcaggccaggccaaataaataggcctatgaaaggccatataccaggctcaggcttgcaaattttttcgtaggccaggctcaggcctatcaaagc 13596191  T
Q  118 ctggtctggcctgacctatttccatcccta 147  Q
    |||| |||||||| |||||| ||| |||||    
T  13596190 ctggcctggcctggcctattcccaacccta 13596161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 24133879 - 24133774
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||| || ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |    
T  24133879 tcaggccagacctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcc 24133780  T
Q  124 tggcct 129  Q
    ||||||    
T  24133779 tggcct 24133774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 33249529 - 33249412
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| ||| |||||| |||| ||||||||||| |||||||  ||||  ||||||    
T  33249529 caggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcttggcct 33249430  T
Q  130 gacctatttccatcccta 147  Q
    | |||||| ||| |||||    
T  33249429 ggcctattcccaacccta 33249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 43010236 - 43010361
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaa-attttttcataggtcaggctcaggcgtatcaaaatctggt 122  Q
    ||||| ||| |||||||||||||||||| ||||| |||||||||||||||||| |||||  ||||||| |||| ||||||||| | ||||||| ||| |     
T  43010236 tcaggccagaccaagaaaaacggcctataataggccataggccaggcttaggcttgtaattttttttcgtaggccaggctcagacctatcaaagtctagc 43010335  T
Q  123 ctggcctgacctatttccatccctaa 148  Q
    |||  ||| |||||| ||| ||||||    
T  43010336 ctgatctggcctattcccaaccctaa 43010361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 42294231 - 42294127
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| |||||| |||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  42294231 caggccaggcctagaaaaacggcctatgataggccataggtcaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 42294132  T
Q  125 ggcct 129  Q
    |||||    
T  42294131 ggcct 42294127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 52274451 - 52274339
Alignment:
Q  29 tcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcc 128  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||| |||| ||| | || |||| ||||||||  |||||| ||||||| ||||| ||| ||    
T  52274451 tcaggcctagaaaaacggcctatgataggccataggccaagctcaggcttgtgatttatttcgtaggtcagattcaggcctatcaaagtctggcctgacc 52274352  T
Q  129 tgacctatttcca 141  Q
    |  ||||||||||    
T  52274351 tagcctatttcca 52274339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 24120285 - 24120364
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctc 103  Q
    ||||||||| || ||||||||||||||||||||| |||||||||| || || ||| ||||||||||| |||| |||||||    
T  24120285 tcaggtcagacctagaaaaacggcctatgataggccataggccagactcagacctataaattttttcgtaggccaggctc 24120364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 31405921 - 31406012
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| ||||| |||||||||||||||| ||||| || ||||||| || |||| ||||||||||||| |||| |||||| |||| |||||||    
T  31405921 tcaggccaggctaagaaaaacggcctataataggccacaggccagactcaggcttgtaaattttttcgtaggccaggcttaggcctatcaaa 31406012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 29076966 - 29076864
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  29076966 ggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 29076867  T
Q  145 cta 147  Q
    |||    
T  29076866 cta 29076864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 34636439 - 34636369
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||    
T  34636439 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaa 34636369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 33069474 - 33069550
Alignment:
Q  72 taggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatccctaa 148  Q
    |||||||| |||||||||| |||| ||||||||||| ||||||| ||||| |||||||| |||||| ||| ||||||    
T  33069474 taggcctgcaaattttttcgtaggccaggctcaggcctatcaaagtctggcctggcctggcctattcccaaccctaa 33069550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 34705313 - 34705436
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||  |||| ||||||||||| |||||||  |||| ||    
T  34705313 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaattttgtaggccaggctcaggcctatcaaagcctggcct 34705412  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    |||||| |||||| ||| ||||||    
T  34705413 ggcctggcctattcccaaccctaa 34705436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 25593675 - 25593765
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||||| || | ||| | || |||| |||| ||||||||||| |||||||    
T  25593675 caggccaggcctaaaaaaacggcctatgataggccataggccaggctcagacttgtgatttatttcgtaggccaggctcaggcctatcaaa 25593765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 47844613 - 47844527
Alignment:
Q  29 tcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||||  ||||||||| ||| ||||||||||||| || |||| |||||||||| |||| ||| ||||||| |||||||    
T  47844613 tcaggccaaaaaaataggcctatgaaaggccataggccaggctcagacctgcaaattttttcgtaggccagactcaggcctatcaaa 47844527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 50638600 - 50638523
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggc 107  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| ||||  ||||||||||    
T  50638600 caggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggctaggctcaggc 50638523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 34422670 - 34422774
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||| ||| ||| ||||||||||||| ||||||| | |||||||| |||| ||||||| ||| |||||||  |||| ||    
T  34422670 caggccaggccaaaaaaataggcctgtgaaaggccataggccaggctcaggcctgcatattttttcgtaggccaggctcgggcctatcaaagcctggcct 34422769  T
Q  125 ggcct 129  Q
    |||||    
T  34422770 ggcct 34422774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 52174809 - 52174913
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||| ||||||| |||||||  |||| ||    
T  52174809 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccagactcaggcctatcaaagcctggcct 52174908  T
Q  125 ggcct 129  Q
    |||||    
T  52174909 ggcct 52174913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 26020353 - 26020399
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggc 70  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  26020353 tcaggccaggcctagaaaaacggcctatgataggccataggccaggc 26020399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 54447703 - 54447581
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| | ||||||| ||||||||||| |||||||||| || |||| ||| | || |||| || | ||||||||||| |||||||  |||| ||    
T  54447703 caggccaggcctaaaaaaacgacctatgataggccataggccagactcaggcttgtgatttatttcgtatgccaggctcaggcctatcaaagcctggcct 54447604  T
Q  125 ggcctgacctatttccatcccta 147  Q
    ||| || |||||| ||| |||||    
T  54447603 ggcttggcctattcccaccccta 54447581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 55008193 - 55008096
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| || | |||||||| ||||||| |||||||||| |||| ||||||||| | |||||||     ||||||||||||||||| ||| ||    
T  55008193 ggcctatgaaaggccacaagccaggctcaggcctgcaaattttttcgtaggacaggctcagacctatcaaa-----gtctggcctgacctattcccaacc 55008099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 22523525 - 22523399
Alignment:
Q  25 caggtcaggccaagaaaaacggcct----atgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctg 120  Q
    ||||||| |||||||||||||||||    |||||||| |||||| ||| |||| |||||||||   |||| |||| ||||||||||  |||||||  |||    
T  22523525 caggtcaagccaagaaaaacggcctatgcatgataggccataggtcagacttatgcctgtaaaaaatttcgtaggccaggctcaggtctatcaaagcctg 22523426  T
Q  121 gtctggcctgacctatttccatcccta 147  Q
    |||||  ||| |||||| ||| |||||    
T  22523425 gtctgatctggcctattcccaccccta 22523399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 54650543 - 54650459
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||| | ||| ||||||||||||| ||||||| ||| |||||| |||| ||||||||| | |||||||  |||| |||||||    
T  54650543 ggcctataaaaggccataggccaggctcaggcctgcaaaatttttcgtaggccaggctcagacctatcaaagcctggcctggcct 54650459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 46068088 - 46067991
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| | | ||||||||||||| ||||||| |||||||||| ||||  ||||||| || |||||     | ||||||||||||||||| ||| ||    
T  46068088 ggcctatgaaaagccataggccaggctcaggcctgcaaattttttcgtaggctaggctcaagcctatca-----tagtctggcctgacctattcccaacc 46067994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 40680471 - 40680349
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||| |||| ||||||||||| ||||| |  |||||||    
T  40680471 caggtcaggcctagaaaaatggcctatgataggccataggccaggctcaggcttgtaaattttttcgtaggccaggctcaggcctatcatagcctggtct 40680372  T
Q  125 ggcctgacctatttccatcccta 147  Q
    | |||| ||||||||||||||||    
T  40680371 gacctggcctatttccatcccta 40680349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 39506631 - 39506753
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||| ||||||||||||||||||||||| ||||||||| |||||||| |||| | | |||| |||| ||||||||||| | ||||| ||||||||    
T  39506631 caggccaggtcaagaaaaacggcctatgataggccataggccaagcttaggcttgtataatctttcgtaggccaggctcaggcctttcaaagtctggtct 39506730  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||||||| |||||    
T  39506731 ggcctggcctatttccaacccta 39506753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 38600828 - 38600951
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||||||||||||||||| ||||| || || ||||||| |||| ||||||||||||| |||| ||||||||||| |||||||  |||| |    
T  38600828 tcaggccaggccaagaaaaacggcctataataggccacagcccaggctcaggcttgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 38600927  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  38600928 tggcctggcctattcccaccccta 38600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 14921489 - 14921366
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |    
T  14921489 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcc 14921390  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  14921389 tggcctggcctattcccaccccta 14921366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 35056302 - 35056211
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| ||||||| | ||||||||||||||||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||| |||||||    
T  35056302 tcagatcaggcctaaaaaaacggcctatgataggccataggccaggatcaggcctgtaaattttttcgtaggccaggctcaggcctatcaaa 35056211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 24580563 - 24580441
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| |||||||| |||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| ||||||| ||||| ||    
T  24580563 caggccaggcctagaaaaacagcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggcct 24580464  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  24580463 ggcctggcctattcccaccccta 24580441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 16364983 - 16365105
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| |||| |||||||| |||| ||| | || |||| |||| ||| ||||||| ||||||| ||||| ||    
T  16364983 caggccaggcctagaaaaacggcctatgataggccatatgccaggctcaggcttgtgatttatttcgtaggccagactcaggcctatcaaagtctggcct 16365082  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  16365083 ggcctggcctattcccaccccta 16365105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 12615222 - 12615138
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||  |||| |||||||    
T  12615222 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggtcaggctcaggcctatcaaagcctggcctggcct 12615138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 23950390 - 23950298
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatt 137  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| ||||||    
T  23950390 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcttatcaaagcctggcctggcctggcctatt 23950298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 10921190 - 10921087
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  || |||||| ||| ||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||  |||| ||    
T  10921190 caggccaggccaaaaaaataggtctatgaaaggccataggccaagcttaggcctgcaaattttttcgtaggtcaggctcaggcctatcaaagcctggcct 10921091  T
Q  125 ggcc 128  Q
    ||||    
T  10921090 ggcc 10921087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 26106499 - 26106378
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||| |  ||||| |||| || |||||||| | |||||  |||| ||    
T  26106499 caggccagaccaagaaaaacggcctatgataggccataggccaggcttaggcttgtata-attttcgtaggccaagctcaggcctttcaaagcctggcct 26106401  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  26106400 ggcctggcctattcccaacccta 26106378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 7383185 - 7383297
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||| |||||||||| || |||| ||| | || |||| |||| ||||||||||| |||||||  ||||  ||||||| |||||    
T  7383185 agaaaaacggcctatgataggccataggccagactcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcttggcctggcctat 7383284  T
Q  137 ttccatccctaat 149  Q
    | ||| |||||||    
T  7383285 tcccacccctaat 7383297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 8000139 - 8000048
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| ||| || ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||    
T  8000139 tcaggccagacctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaa 8000048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 12638107 - 12637984
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||||||||  || |||| ||||| ||||||||||   ||||| ||||| ||||||| |||| |||||| |||| |||||||  |||| ||    
T  12638107 caggccaggccaagaaaattggtctataataggccataggccagatctaggcttgtaatttttttcgtaggccaggcttaggcctatcaaagcctggcct 12638008  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    ||||||||||||| ||| ||||||    
T  12638007 ggcctgacctattcccacccctaa 12637984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 4377013 - 4376943
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcatagg 95  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||| | |||||| ||||    
T  4377013 caggtcaggccaagaaaaacagcctatgataggccataggccagacttaggcttgtataatttttcgtagg 4376943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 26241389 - 26241267
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||| ||    
T  26241389 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcct 26241290  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  26241289 ggcctggcctattcccaacccta 26241267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 32551599 - 32551697
Alignment:
Q  49 tatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcccta 147  Q
    ||||| ||| ||||||||||||| | ||||| |||||||||| |||| ||||||||||| |||||||  |||| |||| |||||||||| ||| |||||    
T  32551599 tatgaaaggccataggccaggctcaagcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggtctgacctattcccaacccta 32551697  T

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Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 44710184 - 44710075
Alignment:
Q  40 aaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttc 139  Q
    |||||||| ||||||||| |||||| ||| || |||| ||| | || |||| ||||  |||||||||| ||||||| ||||||||| |||| |||||| |    
T  44710184 aaaacggcttatgataggccataggtcagactcaggcttgtgatttatttcgtaggcgaggctcaggcctatcaaagtctggtctgacctggcctattcc 44710085  T
Q  140 catccctaat 149  Q
    ||||||||||    
T  44710084 catccctaat 44710075  T

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Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 7960563 - 7960686
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||| | | || ||| ||||||||| |||| ||| ||||||| |||||||  |||  ||    
T  7960563 caggtcaagccaagaaaaacggcctatgataggccataggctagggtcaagcttgt-aattttttcgtaggccagactcaggcctatcaaagcctgacct 7960661  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| | |||| ||| |||||||    
T  7960662 ggcctggcttattcccacccctaat 7960686  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 36684774 - 36684670
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||   ||| |||||||| |||||| ||| ||    
T  36684774 ggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcgtggcctggcctggcctattcccaacc 36684675  T
Q  145 ctaat 149  Q
    |||||    
T  36684674 ctaat 36684670  T

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Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 11989152 - 11989029
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| | ||  ||||||||| ||| |||||| |||||| ||||||| |||||||||| | || ||||||||||| |||||||   ||| |    
T  11989152 tcaggccaggccaaaataataggcctatgaaaggccataggtcaggctcaggcctgcaaattttttcgttggccaggctcaggcctatcaaagcatggcc 11989053  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  11989052 tggcctggcctattcccaacccta 11989029  T

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Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 32983215 - 32983293
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||||||||||||||| |||||| |||||| |||| ||| | || |||| |||| ||||||||||| |||||||    
T  32983215 agaaaaacggcctatgataggccataggtcaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaa 32983293  T

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Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 36054665 - 36054735
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| ||||||||||||| ||||| | |||||||||| |||| ||||||||||| |||||||    
T  36054665 ggcctatgaaaggccataggccaggctcaggccagcaaattttttcgtaggccaggctcaggcctatcaaa 36054735  T

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Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 33303803 - 33303886
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcc 128  Q
    ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| ||||||    
T  33303803 ggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcc 33303886  T

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Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 31519258 - 31519173
Alignment:
Q  28 gtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatca 113  Q
    |||||||||| ||||  ||||||||||||| ||||| |||| || |||| ||  ||||||||| |||| ||||||||||| |||||    
T  31519258 gtcaggccaaaaaaataggcctatgataggccatagaccagactcaggcttgctaattttttcgtaggccaggctcaggcctatca 31519173  T

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Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 10954447 - 10954371
Alignment:
Q  39 aaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| ||||||||| ||| ||||||||||||| || |||| ||| |||||| |||  ||||||||||| |||||||    
T  10954447 aaaaaaggcctatgaaaggccataggccaggctcagtcctgcaaaatttttcgtagaccaggctcaggcctatcaaa 10954371  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 10962452 - 10962376
Alignment:
Q  39 aaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| ||||||||| ||| ||||||||||||| || |||| ||| |||||| |||  ||||||||||| |||||||    
T  10962452 aaaaaaggcctatgaaaggccataggccaggctcagtcctgcaaaatttttcgtagaccaggctcaggcctatcaaa 10962376  T

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Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 44755631 - 44755544
Alignment:
Q  60 ataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcccta 147  Q
    |||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| |||||    
T  44755631 ataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaccccta 44755544  T

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Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 14540997 - 14541047
Alignment:
Q  94 ggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    |||||||||||| | ||||||| | |||||||||||| |||||||||||||    
T  14540997 ggtcaggctcagacctatcaaagtatggtctggcctggcctatttccatcc 14541047  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 48659439 - 48659319
Alignment:
Q  28 gtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggc 127  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||| |||||||  || | |||||    
T  48659439 gtcaggcctagaaaaacggcctatgataggtcataggccaggctcaggcctgtaaattttttcgtaggctaggctcaggcctatcaaagcctagcctggc 48659340  T
Q  128 ctgacctatttccatccctaa 148  Q
    ||| |||||| ||| ||||||    
T  48659339 ctggcctattcccacccctaa 48659319  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 17981301 - 17981424
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| ||||||| ||||||||    
T  17981301 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggtct 17981400  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    |||||| |||||| ||| ||||||    
T  17981401 ggcctggcctattcccacccctaa 17981424  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 8753789 - 8753911
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| |||||||| || |||||||  |||| ||    
T  8753789 caggtcaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcatgcctatcaaagcctggcct 8753888  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  8753889 ggcctggcctattcccaacccta 8753911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 29590472 - 29590597
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| | ||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |    
T  29590472 tcaggccaggcctaaaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcc 29590571  T
Q  124 tggcctgacctatttccatccctaat 149  Q
    ||||||| |||||| ||| |||||||    
T  29590572 tggcctggcctattcccacccctaat 29590597  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 40730460 - 40730563
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  40730460 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 40730559  T
Q  145 ctaa 148  Q
    ||||    
T  40730560 ctaa 40730563  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 48826102 - 48826000
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  48826102 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 48826003  T
Q  145 cta 147  Q
    |||    
T  48826002 cta 48826000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 37010987 - 37011111
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| |||||||||| || ||||||| |||||||||| |||| ||||||||||| ||||||| ||||| ||    
T  37010987 caggccaggccaaaaaaataggcctatgaaaggccataggccag-ctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagtctggcct 37011085  T
Q  125 ggcctgacctatttccatccctaata 150  Q
    |||||  |||||| ||| ||||||||    
T  37011086 ggcctagcctattcccaaccctaata 37011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 34432991 - 34433115
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||||||| |||| | |||||| ||||| || || |||| | |||||  |||  ||    
T  34432991 caggccaggccaagaaaaacggcttatgataggccataggccaggcttaggcttgtataatttttcgtaggttagactaaggcctttcaaagcctgacct 34433090  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||||| |||| ||| |||||||    
T  34433091 ggcctgacttattcccaaccctaat 34433115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 47691680 - 47691596
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||||||| ||||| |||||||    
T  47691680 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagtctggcctggcct 47691596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 4422183 - 4422060
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    |||| |||||||||||||||| |||||| ||||| || |||||| |||  ||| ||||||||||||| |||| ||||||||||  |||||||  |||| |    
T  4422183 tcagatcaggccaagaaaaacagcctataataggccacaggccaagctccggcttgtaaattttttcgtaggccaggctcaggtctatcaaagcctggcc 4422084  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  4422083 tggcctggcctattcccaccccta 4422060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 48801244 - 48801343
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||||||||| ||||||||||||||||| ||||||| |||||||||| | || ||||||||||| |||||||  |||| |||||||    
T  48801244 caggccaaaaaaataggcctatgaaaggtcataggccaggctcaggcctgcaaattttttcgttggccaggctcaggcctatcaaagcctggcctggcct 48801343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 20039657 - 20039747
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||    
T  20039657 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaa 20039747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 38308095 - 38308197
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| ||| |||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  38308095 ggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 38308194  T
Q  145 cta 147  Q
    |||    
T  38308195 cta 38308197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 38973704 - 38973614
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||  ||||||||||| |||||||    
T  38973704 caggtcaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtagtccaggctcaggcctatcaaa 38973614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 48089794 - 48089916
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| |||| |||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||  ||    
T  48089794 caggccaggccaaaaaaataggcctatgaaaggccatatgccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctgacct 48089893  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  48089894 ggcctggcctattcccaacccta 48089916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 10010869 - 10010993
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| | ||  ||||||||| ||  ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |    
T  10010869 tcaggccaggccaaaataataggcctatgaaagaccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 10010968  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    || |||| |||||| ||| ||||||    
T  10010969 tgacctggcctattcccaaccctaa 10010993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 10018010 - 10018134
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| | ||  ||||||||| ||  ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |    
T  10018010 tcaggccaggccaaaataataggcctatgaaagaccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 10018109  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    || |||| |||||| ||| ||||||    
T  10018110 tgacctggcctattcccaaccctaa 10018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 46903894 - 46903985
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| |||||||||||||||||||||| |||||  | |||||||||| |||| ||||||   |||| |||||||||||||||| |||||||    
T  46903894 tcaggccaggccaagaaaaacggcctataataggcgacaggccaggctcaggcttgtaaaaaatttcgtaggtcaggctcaggcctatcaaa 46903985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 32468275 - 32468397
Alignment:
Q  26 aggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaa-ttttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||| ||||||||| | | | |||||||| ||||||||||||||| || |||||| ||||||| ||||  || ||||||  ||||||| ||||| ||    
T  32468275 aggtcagaccaagaaaaccagtcaatgataggccataggccaggcttaagcttgtaaatttttttcgtaggctagactcaggtctatcaaagtctggcct 32468374  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||||||| |||||    
T  32468375 ggcctggcctatttccaccccta 32468397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 12582221 - 12582116
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| |||||||| |||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||| ||||||| |||||||  |||| ||    
T  12582221 caggccaggcctagaaaaacagcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccagactcaggcctatcaaagcctggcct 12582122  T
Q  125 ggcctg 130  Q
    ||||||    
T  12582121 ggcctg 12582116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 20392939 - 20393044
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgt-aaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgaccta 135  Q
    ||||||||| |||| |||||||||||||||||||| |||||||| |||    |||||||| ||||||||||| |||||||  |||  |||||||| ||||    
T  20392939 agaaaaacgacctacgataggtcataggccaggctcaggcctgtaaaaaaaattcataggccaggctcaggcctatcaaagcctgacctggcctggccta 20393038  T
Q  136 tttcca 141  Q
    ||||||    
T  20393039 tttcca 20393044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 31842963 - 31842878
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||||| |||||||||| |||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||    
T  31842963 caggcctagaaaaacggtctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaa 31842878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 11845391 - 11845481
Alignment:
Q  59 cataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatccctaat 149  Q
    ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| |||||||    
T  11845391 cataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctaat 11845481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 16711845 - 16711743
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||| ||| ||| ||||||||||||| ||||||| |||||||||| |||| ||| ||||| | |||||||  || |  |||||||||||||||||| ||    
T  16711845 ggcctgtgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccagactcagacctatcaaagcctagcttggcctgacctatttccaacc 16711746  T
Q  145 cta 147  Q
    |||    
T  16711745 cta 16711743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 35041799 - 35041881
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggc 127  Q
    ||||||| ||||| || |||||| ||| |||| ||||||||||||  |||| ||||||||||| ||||||| |||||||||||    
T  35041799 ggcctataataggccacaggccaagctcaggcttgtaaatttttttgtaggccaggctcaggcctatcaaagtctggtctggc 35041881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 9627603 - 9627486
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||||||||| ||| |||||| ||| || ||||||| ||||| |||  |||| ||||||||||| |||||||  |||| ||| |||    
T  9627603 caggccaaaaaaataggcctatgaaaggccataggtcagactcaggcctgcaaattcttttgtaggccaggctcaggcctatcaaagcctggcctgacct 9627504  T
Q  130 gacctatttccatcccta 147  Q
    | |||||||||| |||||    
T  9627503 ggcctatttccaacccta 9627486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 36488879 - 36488771
Alignment:
Q  39 aaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctattt 138  Q
    ||||| ||||||||||||  ||||| |||| || |||| ||| | || |||| |||| ||||||||| | ||||||| ||||| |||||||| ||||||     
T  36488879 aaaaatggcctatgatagaccatagaccagactcaggcttgtgatttatttcgtaggccaggctcagacctatcaaagtctggcctggcctggcctattc 36488780  T
Q  139 ccatcccta 147  Q
    |||||||||    
T  36488779 ccatcccta 36488771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 41487551 - 41487467
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| |||||||    
T  41487551 ggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcct 41487467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 20484355 - 20484402
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggctt 72  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  20484355 caggttaggccaagaaaaacgacctatgataggccataggccaggctt 20484402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 49389555 - 49389450
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||||||| || | |||||| |||||||||||  |||| ||||| || |||| ||| | || |||| |||| ||||||||||| |||||||| |||| |    
T  49389555 tcaggtcagacctaaaaaaacagcctatgatagaccataagccagactcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaaacctggcc 49389456  T
Q  124 tggcct 129  Q
    ||||||    
T  49389455 tggcct 49389450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 22270410 - 22270521
Alignment:
Q  36 aagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgaccta 135  Q
    |||||||| | ||||||||| | ||||||||||||| | || ||||||  ||||  ||||  |||||||||| |||||||  || ||||| |||||||||    
T  22270410 aagaaaaatgacctatgatatgccataggccaggctcaagcttgtaaaaattttagtaggctaggctcaggcctatcaaagccttgtctgacctgaccta 22270509  T
Q  136 tttccatcccta 147  Q
    || ||| |||||    
T  22270510 ttcccaccccta 22270521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 23106406 - 23106476
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| |||||||||| || |||| || |||||||||||||||  || ||||||| |||||||    
T  23106406 ggcctatgaaaggccataggccagactcaggcttgcaaattttttcataggctagactcaggcctatcaaa 23106476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 52225667 - 52225769
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| |||  |||||||||||| ||||||| |||||||||| |||   || ||||| | ||||||| ||||| ||| |||| |||||| ||| ||    
T  52225667 ggcctatgaaaggctataggccaggctcaggcctgcaaattttttcgtagactagactcagacctatcaaagtctggcctgacctggcctattcccaacc 52225766  T
Q  145 cta 147  Q
    |||    
T  52225767 cta 52225769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 50637187 - 50637272
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||||| ||||||| ||||||||||||| |||||||||| || |||  ||| | || |||| |||| || |||||||| |||||||    
T  50637187 caggcctagaaaaatggcctatgataggccataggccagactcaggtttgtgatttatttcgtaggccaagctcaggcctatcaaa 50637272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 29298989 - 29299025
Alignment:
Q  313 tatattttagattatataatttgaatctcctaaaaat 349  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  29298989 tatattttggattatataatctgaatctcctaaaaat 29299025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 42650038 - 42650162
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||| |||||||   | | ||    
T  42650038 caggtcaggcctagaaaaacggcctatgataggtcataggccaggctcaggcctgtaaattttttcgtaggctaggctcaggcctatcaaagcttagcct 42650137  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  42650138 ggcctggcctattcccacccctaat 42650162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 44912707 - 44912596
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| | || |||| |||||||| ||||||| ||||||| ||||| ||| ||||||||||    
T  44912707 agaaaaacggcctatgataggtcataggccaggctcaggcttgtgatttatttcgtaggtcagactcaggcctatcaaagtctggcctgacctgacctat 44912608  T
Q  137 ttccatccctaa 148  Q
    | ||||||||||    
T  44912607 tcccatccctaa 44912596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 19507167 - 19507057
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||| || |||| |||| ||||||||||| |||||||  |||||||||||||||||||    
T  19507167 agaaaaacggcctatgataggtcataggtcaggctcaggcttgtaatttatttcgtaggccaggctcaggcctatcaaagcctggtctggcctgacctat 19507068  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  19507067 tcccaccccta 19507057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 10805140 - 10805017
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| |||| |||||||| || |||||||  |||| |    
T  10805140 tcaggccaggccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcatgcctatcaaagcctggcc 10805041  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  10805040 tggcctggcctattcccaccccta 10805017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 42384323 - 42384218
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||||||||||||||| ||||||| ||||| |    
T  42384323 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggtcaggctcaggcctatcaaagtctggcc 42384224  T
Q  124 tggcct 129  Q
    ||||||    
T  42384223 tggcct 42384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 15321899 - 15322026
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||| |||||||||||||||||| ||||| || | |||||||| |||| ||||||||||||| |||| ||||||||||| |||||||  |||| |    
T  15321899 tcaggccagaccaagaaaaacggcctataataggccacatgccaggctcaggcttgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 15321998  T
Q  124 tggcctgacctatttccatccctaataa 151  Q
    || |||| |||||| ||| |||||||||    
T  15321999 tgacctggcctattcccacccctaataa 15322026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 39919727 - 39919604
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |    
T  39919727 tcaggccagacctagaaaaacggcctatgataggtcataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcc 39919628  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  39919627 tggcctggcctattcccaccccta 39919604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 6305146 - 6305024
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||||||| || |||||||| |||||||||||  | ||||||||| | ||||||||||||||||||||||| ||||||||| | |||||||  |||| ||    
T  6305146 caggtcagacctagaaaaacagcctatgatagaccgtaggccaggttcaggcctgtaaattttttcataggccaggctcagacctatcaaagcctggcct 6305047  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  6305046 ggcctggcctattcccaccccta 6305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 17386311 - 17386421
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| || |||| | | | || |||| |||| ||||||||||| ||||||||||||| |    
T  17386311 tcaggccaggcctagaaaaacggcctatgataggccataggccagactcaggcttatgatttatttcgtaggccaggctcaggcctatcaaaatctggcc 17386410  T
Q  124 tggcctgacct 134  Q
    |||||||||||    
T  17386411 tggcctgacct 17386421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 18342680 - 18342558
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| |||||||| || ||||||| ||||||||    
T  18342680 caggacaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaagcctatcaaagtctggtct 18342581  T
Q  125 ggcctgacctatttccatcccta 147  Q
    || ||| |||||| ||| |||||    
T  18342580 ggtctggcctattcccaccccta 18342558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 26257500 - 26257390
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||| | || ||||||||||||| ||||||| |||||||  ||| ||||||||| |||||    
T  26257500 agaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcataggtcagactcaggcctatcaaagcctgatctggcctggcctat 26257401  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  26257400 tcccaccccta 26257390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 34050008 - 34050133
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatg--ataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctgg 121  Q
    ||||| |||||||| |||||||||||||   ||||| || |||||||||| |||| ||||||||||||| |||| ||||||||  | ||||||| |||||    
T  34050008 tcaggccaggccaaaaaaaacggcctatataataggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcaaacctatcaaagtctgg 34050107  T
Q  122 tctggcctgacctatttccatcccta 147  Q
     ||||||||||||||||||| |||||    
T  34050108 cctggcctgacctatttccaccccta 34050133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 52222847 - 52222725
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||||||||||| ||| |||||| |||| ||||||||||| |||||||  |||| ||    
T  52222847 caggccaggccaaaaaaataggcctatgaaaggccataggccaggcttaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcct 52222748  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  52222747 ggcctggcctattcccaacccta 52222725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 44779491 - 44779600
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||| | ||||||||||||| |||| ||| | || ||||||||||||||||||||| |||||||  |||| |||||||| |||||    
T  44779491 agaaaaacggcctatgataagccataggccaggctcaggcttgtgatttatttcataggtcaggctcaggcctatcaaagcctggcctggcctggcctat 44779590  T
Q  137 ttccatccct 146  Q
    | ||| ||||    
T  44779591 tcccacccct 44779600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 8417349 - 8417237
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||||||||||| ||| |||||| |||| ||||||||||| |||||||  |||| ||    
T  8417349 caggccaggccaaaaaaataggcctatgaaaggccataggccaggcttaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcct 8417250  T
Q  125 ggcctgacctatt 137  Q
    |||||| ||||||    
T  8417249 ggcctggcctatt 8417237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 12298256 - 12298134
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||| ||||||||| |||| ||| | ||||||| |||| ||| ||||||| |||||||| || | ||    
T  12298256 caggccaggcctagaaaaacggcctatgataggccattggccaggctcaggcttgtgatttttttcgtaggccagactcaggcctatcaaaacctagcct 12298157  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  12298156 ggcctggcctattcccaccccta 12298134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 13077416 - 13077294
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| ||||  |||||||||| ||||||| ||||| ||    
T  13077416 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggctaggctcaggcctatcaaagtctggcct 13077317  T
Q  125 ggcctgacctatttccatcccta 147  Q
    | |||| |||||| ||| |||||    
T  13077316 gacctggcctattcccaccccta 13077294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 18353190 - 18353088
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| |||| |||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| ||||||||||||||| ||| ||    
T  18353190 ggcctatgaaaggccataagccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctgacctattcccaacc 18353091  T
Q  145 cta 147  Q
    |||    
T  18353090 cta 18353088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 46313742 - 46313665
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggc 107  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||| |||| | |||||| |||| |||||||||||    
T  46313742 caggccaagaaaaacggcctatgataggccataggctaggcttaggcttgtataatttttcgtaggccaggctcaggc 46313665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 39860484 - 39860588
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||  ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  39860484 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtagaccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 39860583  T
Q  145 ctaat 149  Q
    |||||    
T  39860584 ctaat 39860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 10312113 - 10312022
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||| |||| ||||| ||||||  |||| ||||||||||| |||||||    
T  10312113 tcaggccaggccaagaaaaacggcctattataggccacaggccaggctcaggcttgtaattttttttgtaggccaggctcaggcctatcaaa 10312022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 38672133 - 38672256
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || ||||  ||| ||||||||||| |||||||| |||| |    
T  38672133 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgaaggccaggctcaggcctatcaaaacctggcc 38672232  T
Q  124 tggcctgacctatttccatcccta 147  Q
    |||  || |||||| ||| |||||    
T  38672233 tggtttggcctattcccaccccta 38672256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 16452495 - 16452385
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||| ||||||||||||| | || ||| | || |||||||||  |||||||||| |||||||  |||| |||||||| |||||    
T  16452495 agaaaaacggcctatgataggccataggccaggctcaagcttgtgatttatttcataggctaggctcaggcctatcaaagcctggcctggcctggcctat 16452396  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  16452395 tcccaccccta 16452385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 16461647 - 16461537
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||| ||||||||||||| | || ||| | || |||||||||  |||||||||| |||||||  |||| |||||||| |||||    
T  16461647 agaaaaacggcctatgataggccataggccaggctcaagcttgtgatttatttcataggctaggctcaggcctatcaaagcctggcctggcctggcctat 16461548  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  16461547 tcccaccccta 16461537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 17805935 - 17805813
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| ||| |||||| || | ||||||||||| |||||||  |||| ||    
T  17805935 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtatgccaggctcaggcctatcaaagcctggcct 17805836  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  17805835 ggcctggcctattcccaacccta 17805813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 5499967 - 5500084
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||| ||||||||||| ||||||||| |||| |||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |||||||    
T  5499967 caggcctagaaaaacggcttatgataggccataagccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcct 5500066  T
Q  130 gacctatttccatcccta 147  Q
    | |||||| ||| |||||    
T  5500067 ggcctattcccaccccta 5500084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 34084071 - 34083979
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatt 137  Q
    ||||||||| ||| |||||||||| || ||||||| |||||||||| |||| ||||||||||| ||||||| ||||| |||| ||| ||||||    
T  34084071 ggcctatgaaaggccataggccagactcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagtctggcctggtctggcctatt 34083979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 13253365 - 13253276
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| |||||||| ||||| ||||||||| ||| |||||| |||||| ||||||| |||||||||| |||| ||||||||||| |||||||    
T  13253365 caggccaggccaaaaaaaa-ggcctatgaaaggccataggtcaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaa 13253276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 15849936 - 15849814
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||| || ||||||| |||||| |||||||||||||||||||| |||| ||| | || |||| |||| ||| ||||||| |||||||  |||| |    
T  15849936 tcaggccagacctagaaaaatggcctaggataggtcataggccaggctcaggcttgtgatttatttcgtaggccagactcaggcctatcaaatcctggcc 15849837  T
Q  124 tggcctgacctatttccatccct 146  Q
    ||||||| |||||| ||| ||||    
T  15849836 tggcctggcctattcccacccct 15849814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 19708975 - 19709097
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||| ||    
T  19708975 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcct 19709074  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  19709075 ggcctggcctattcccaacccta 19709097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 24038343 - 24038241
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||| ||||| |||| || |||||||||| |||| ||||||||||| |||||||  |||| ||| ||||||||||| ||| ||    
T  24038343 ggcctatgaaaggccataggctaggctcaggcttgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctgacctgacctattcccaacc 24038244  T
Q  145 cta 147  Q
    |||    
T  24038243 cta 24038241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 31493450 - 31493548
Alignment:
Q  31 aggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||| ||||  ||||||||| | ||||||||||||||| | || ||||||||||||| |||| ||||||||||| |||||||  |||| |||||||    
T  31493450 aggccaaaaaaataggcctatgaaatgtcataggccaggctcaagcttgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcct 31493548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 46846880 - 46846790
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| ||| |||||| |||| ||||||||||| |||||||    
T  46846880 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaa 46846790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 6889516 - 6889633
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||| ||||| |||  |||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||    
T  6889516 caggccaaaaaaataggcttatgaaaggctataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcct 6889615  T
Q  130 gacctatttccatcccta 147  Q
      |||||| ||| |||||    
T  6889616 agcctattcccaacccta 6889633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 6891362 - 6891479
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||| ||||| |||  |||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||    
T  6891362 caggccaaaaaaataggcttatgaaaggctataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcct 6891461  T
Q  130 gacctatttccatcccta 147  Q
      |||||| ||| |||||    
T  6891462 agcctattcccaacccta 6891479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 18437202 - 18437098
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||| ||||| ||||||| |||||||||| |||  ||||||||||| ||||||| ||||  ||||  || |||||||||| ||    
T  18437202 ggcctatgaaaggccataggctaggctcaggcctgcaaattttttcgtagaccaggctcaggcctatcaaagtctgacctggtttggcctatttccaacc 18437103  T
Q  145 ctaat 149  Q
    |||||    
T  18437102 ctaat 18437098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 18448059 - 18447955
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||| ||||| ||||||| |||||||||| |||  ||||||||||| ||||||| ||||  ||||  || |||||||||| ||    
T  18448059 ggcctatgaaaggccataggctaggctcaggcctgcaaattttttcgtagaccaggctcaggcctatcaaagtctgacctggtttggcctatttccaacc 18447960  T
Q  145 ctaat 149  Q
    |||||    
T  18447959 ctaat 18447955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 18453152 - 18453048
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||| ||||| ||||||| |||||||||| |||  ||||||||||| ||||||| ||||  ||||  || |||||||||| ||    
T  18453152 ggcctatgaaaggccataggctaggctcaggcctgcaaattttttcgtagaccaggctcaggcctatcaaagtctgacctggtttggcctatttccaacc 18453053  T
Q  145 ctaat 149  Q
    |||||    
T  18453052 ctaat 18453048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 23555869 - 23555745
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgta-aattttttcataggtcaggctcaggcgtatcaaaatctggt 122  Q
    ||||| ||| |||||| ||||||||||| ||||| || |||||||||| |||| |||| | ||||||| |||| ||||||||||| |||||||  |||      
T  23555869 tcaggccagaccaagataaacggcctataataggccacaggccaggctcaggcttgtatatttttttcgtaggccaggctcaggcctatcaaagcctgac 23555770  T
Q  123 ctggcctgacctatttccatcccta 147  Q
    |||||||| |||||| ||| |||||    
T  23555769 ctggcctggcctattcccaccccta 23555745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 27090835 - 27090927
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||| |||||||||||||||||||| |||||| || | ||| | || |||| |||| ||||||||||| ||||||| ||||| |||||||    
T  27090835 agaaaaatggcctatgataggtcataggtcaggctcagacatgtgatttatttcgtaggccaggctcaggcctatcaaagtctggcctggcct 27090927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 32239310 - 32239402
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatt 137  Q
    ||||||||| ||| ||||||||||||| ||| ||| |||   |||||||||  |||||||||| |||||||| |||| |||||||||||||||    
T  32239310 ggcctatgaaaggccataggccaggctcaggactgcaaaaaatttcataggctaggctcaggcctatcaaaacctggcctggcctgacctatt 32239402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 33785316 - 33785194
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| | ||||| |||   |||| |||| ||||||||||| |||||||  |||| ||    
T  33785316 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaagcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcct 33785217  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  33785216 ggcctggcctattcccaacccta 33785194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 5506903 - 5506956
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcct 78  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  5506903 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcct 5506956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 7109590 - 7109675
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||||||| ||||  ||| ||||| ||| ||||||||| ||| ||||||| |||||||||| |||| ||||||||||| |||||||    
T  7109590 caggccaaaaaaataggcttatgaaaggccataggccaagctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaa 7109675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 29523073 - 29523173
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattt-tttcataggtcaggctcaggcgtatcaaaatctggtctggcc 128  Q
    |||||| ||||||||||||||||||||| ||||||||| ||| |||| ||| | ||| |||| |||| ||||||||| | |||||||  |||| ||||||    
T  29523073 caggcctagaaaaacggcctatgataggccataggccaagctcaggcttgtgattttatttcgtaggccaggctcagacctatcaaagcctggcctggcc 29523172  T
Q  129 t 129  Q
    |    
T  29523173 t 29523173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 3831598 - 3831543
Alignment:
Q  60 ataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||||||||||| ||||||| |||||||||| |||| |||||| |||| |||||||    
T  3831598 ataggccaggctcaggcctgcaaattttttcgtaggccaggcttaggcctatcaaa 3831543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 31316147 - 31316073
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctca 104  Q
    ||||| ||| |||||||||||||||||| |||| ||||  ||||||| |||||| |||||  |||||||| ||||    
T  31316147 caggctaagtaaaacggcctatgataggccatatgccaaacttaggcttgtaaacttttttgtaggtcagactca 31316073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 47367500 - 47367589
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| || || | ||| | || |||| |||| ||||||||| | |||||||    
T  47367500 caggtcaggcctagaaaa-cggcctatgataggccataggccagactcagacttgtgatttatttcgtaggccaggctcagacctatcaaa 47367589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 27332499 - 27332621
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| | |||||| |||| ||||||||||| | |||||  |||||||    
T  27332499 caggtcaggccaagaaaaaaggcctatgataggccataggccaggcttaggcttgtataatttttcgtaggccaggctcaggcatttcaaagcctggtct 27332598  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  27332599 ggcctggcctattcccaacccta 27332621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 14949531 - 14949649
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| |||| ||||||||| | |||||||  |||| |||||||    
T  14949531 caggccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcagacctatcaaagcctggcctggcct 14949630  T
Q  130 gacctatttccatccctaa 148  Q
    |||||||| ||| ||||||    
T  14949631 gacctattcccacccctaa 14949649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 370274 - 370166
Alignment:
Q  29 tcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcc 128  Q
    ||||||| ||||||||||| ||||||||| |||||||||| || |||||| ||||| ||||| ||| |||||||||||| ||||||| ||| ||||||||    
T  370274 tcaggcctagaaaaacggcatatgataggccataggccagactcaggcctataaatattttcgtagatcaggctcaggcctatcaaagtcttgtctggcc 370175  T
Q  129 tgacctatt 137  Q
    |||||||||    
T  370174 tgacctatt 370166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 18158500 - 18158378
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  18158500 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 18158401  T
Q  125 ggcctgacctatttccatcccta 147  Q
    ||||||||||||| ||| |||||    
T  18158400 ggcctgacctattcccaacccta 18158378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 13916771 - 13916875
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| || | ||||||||||| ||||||| |||||||    
T  13916771 tcaggccaggccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgta-gacaggctcaggcctatcaaagtctggtc 13916869  T
Q  124 tggcct 129  Q
    ||||||    
T  13916870 tggcct 13916875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 11877585 - 11877461
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||||||| || ||||||||||||||||||||| |||||| |||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |    
T  11877585 tcaggtcagacctagaaaaacggcctatgataggccataggtcaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcc 11877486  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    |||||||||||||| ||| ||||||    
T  11877485 tggcctgacctattcccaaccctaa 11877461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 10017886 - 10017763
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||||||||||||||||| |||| ||||  || |||||||||| |||| ||||||||||||| |||| ||||||||||| |||||||  |||| |    
T  10017886 tcaggccaggccaagaaaaacggtctataatagaccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 10017787  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  10017786 tggcctggcctattcccaccccta 10017763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 12880561 - 12880466
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttcc 140  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||||||    
T  12880561 ggcctatgaaaggtcataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctatttcc 12880466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 40084105 - 40083983
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  40084105 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 40084006  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  40084005 ggcctggcctattcccaacccta 40083983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 4049447 - 4049567
Alignment:
Q  29 tcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcc 128  Q
    ||||||||| ||||  || |||||| ||||||||||||||||| ||||||| |||||||||| |||||||  ||||| | ||||||| | ||| ||||||    
T  4049447 tcaggccaaaaaaataggtctatgaaaggtcataggccaggctcaggcctgcaaattttttcgtaggtcaaactcagacctatcaaagtgtggcctggcc 4049546  T
Q  129 tgacctatttccatccctaat 149  Q
    ||||||||| ||| |||||||    
T  4049547 tgacctattcccaaccctaat 4049567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 6644158 - 6644281
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||  ||||||    
T  6644158 tcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctattaaagcctggtc 6644257  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||| ||| |||||| ||| |||||    
T  6644258 tggtctggcctattcccaacccta 6644281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 17870044 - 17870147
Alignment:
Q  26 aggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctg 125  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||| | || |||| |||| ||||||||||| |||||||  |||| |||    
T  17870044 aggtcaggcctagaaaaacggcctataataggccataggccaggcttaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctg 17870143  T
Q  126 gcct 129  Q
    ||||    
T  17870144 gcct 17870147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 9163550 - 9163425
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| ||    
T  9163550 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcct 9163451  T
Q  125 ggcctgacctatttccatccctaata 150  Q
    |||||| |||||| ||| ||||||||    
T  9163450 ggcctggcctattcccaaccctaata 9163425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 3881072 - 3881152
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctca 104  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| |||| ||| ||||    
T  3881072 tcaggtcaggccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccagactca 3881152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 34855438 - 34855347
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| ||||||||||||||| |||||| ||||| || |||||||||| |||| ||||||||||||| |||| |||||||| || |||||||    
T  34855438 tcaggccaggccaagaaaaacagcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcaagcctatcaaa 34855347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 38254815 - 38254693
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||||||| ||  |||||||||||||||||||| ||||||||||||| || | ||| | ||  ||| |||| ||||||||||| ||||||| ||||| ||    
T  38254815 caggtcagacctggaaaaacggcctatgataggccataggccaggctcagacttgtgatttacttcgtaggccaggctcaggcctatcaaagtctggcct 38254716  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  38254715 ggcctggcctattcccaccccta 38254693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 36113248 - 36113157
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||  |||||||    
T  36113248 tcaggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggtctatcaaa 36113157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 31271455 - 31271557
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||  |||||||||| |||| |||||| |||| |||||||  |||| |||||||| |||||| ||| ||    
T  31271455 ggcctatgaaaggccataggccaggctcaggcctacaaattttttcgtaggccaggcttaggcctatcaaagcctggcctggcctggcctattcccaacc 31271554  T
Q  145 cta 147  Q
    |||    
T  31271555 cta 31271557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 858748 - 858635
Alignment:
Q  35 caagaaaaacggcctatgataggtcataggccaggcttaggcctgta-aattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacc 133  Q
    ||||||||||| ||||||||||| |||||  ||||||||||| |||| |||||||||||||| ||| ||||||  | ||||| ||||| ||| | |||||    
T  858748 caagaaaaacgacctatgataggccatagatcaggcttaggcgtgtataattttttcataggccagactcagggctttcaaagtctggcctgacatgacc 858649  T
Q  134 tatttccatcccta 147  Q
    |||| ||| |||||    
T  858648 tattcccaccccta 858635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 7079107 - 7079022
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| |||||||| || |||||||    
T  7079107 caggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaagcctatcaaa 7079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 27054504 - 27054589
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||||| ||||||||| ||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||    
T  27054504 caggcctagaaaaacgacctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaa 27054589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 491341 - 491253
Alignment:
Q  59 cataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcccta 147  Q
    ||||||||||||| ||||||| |||||||||| |||| |||||| |||| |||||||  |||| |||||||| |||||| ||| |||||    
T  491341 cataggccaggctcaggcctgcaaattttttcgtaggccaggcttaggcctatcaaagcctggcctggcctggcctattcccaacccta 491253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 42062307 - 42062431
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| ||||  ||| ||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||| |    
T  42062307 tcaggccaggccaaaaaaataggcttatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcc 42062406  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    ||||||| |||||| ||| ||||||    
T  42062407 tggcctggcctattcccaaccctaa 42062431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 10931747 - 10931616
Alignment:
Q  18 aggctttcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaat 117  Q
    ||||||||||| ||| |||| ||||  ||||||| | ||| | ||||||| ||| | ||||| |||||||||| |||| ||| ||||||| |||||||||    
T  10931747 aggctttcaggccagaccaaaaaaataggcctataaaaggccctaggccaagctcatgcctgcaaattttttcgtaggccagactcaggcctatcaaaat 10931648  T
Q  118 ctggtctggcctgacctatttccatccctaat 149  Q
    |||| ||| || | |||||| ||| |||||||    
T  10931647 ctggcctgaccaggcctattcccaaccctaat 10931616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 15397667 - 15397567
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    |||||||| | |||||||||| ||||||||| ||| | || ||| | || |||| |||| ||||||||| | ||||||| ||||| ||||||||||||||    
T  15397667 agaaaaacagtctatgataggccataggccaagctcaagcttgtgatttatttcgtaggccaggctcagacctatcaaagtctggcctggcctgacctat 15397568  T
Q  137 t 137  Q
    |    
T  15397567 t 15397567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 7035264 - 7035194
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||| ||||| | |||||||    
T  7035264 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccagactcagacctatcaaa 7035194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 42288510 - 42288594
Alignment:
Q  31 aggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||| ||||  || |||||| ||| ||||||||||||| ||||||| || ||||||| |||| ||| ||||||| |||||||    
T  42288510 aggccaaaaaaataggtctatgaaaggccataggccaggctcaggcctgcaatttttttcgtaggccagactcaggcctatcaaa 42288594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 15678224 - 15678274
Alignment:
Q  101 ctcaggcgtatcaaaatctggtctggcctgacctatttccatccctaataa 151  Q
    ||||||| |||||||||||||||||||| | |||||| ||| |||||||||    
T  15678224 ctcaggcctatcaaaatctggtctggccaggcctattcccacccctaataa 15678274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 9294 - 9151
Alignment:
Q  4 gtaggcttggaagaaggctttcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctc 103  Q
    |||||| || ||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| | || |||  |||| |||||||    
T  9294 gtaggcctgtaagtaggcttttaggtcagacctagaaaaacggcctatgataggtcataggccaggctcaggcttgtgatttattttgtaggccaggctc 9195  T
Q  104 aggcgtatcaaaatctggtctggcctgacctatttccatcccta 147  Q
    |||| |||||||  ||||||||||||| |||||| ||| |||||    
T  9194 aggcctatcaaagcctggtctggcctggcctattcccaccccta 9151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 2995045 - 2995168
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| ||||||| ||||||||    
T  2995045 caggccaggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggtct 2995144  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    |||||| |||||| ||| ||||||    
T  2995145 ggcctggcctattcccacccctaa 2995168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 35959452 - 35959329
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||| |||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||| |||| ||||||||||| |||||||   ||| |    
T  35959452 tcaggccagaccaagaaaaacggcctataataggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcaggcctatcaaagcttggcc 35959353  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  35959352 tggcctggcctattcccaccccta 35959329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 2182724 - 2182846
Alignment:
Q  28 gtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggc 127  Q
    |||||||| |||||||||||||||||||||  |||||||||||| || | ||| | || |||| |||| ||||||||||| ||||||| ||||| ||| |    
T  2182724 gtcaggcctagaaaaacggcctatgataggctataggccaggctcagacttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggcctgac 2182823  T
Q  128 ctgacctatttccatccctaata 150  Q
    ||| |||||| ||||||||||||    
T  2182824 ctggcctattcccatccctaata 2182846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 13029108 - 13029230
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| ||    
T  13029108 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcct 13029207  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  13029208 ggcctggcctattcccaacccta 13029230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 34726326 - 34726451
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| | ||  ||||||||| ||| ||||||||||||| ||||||||||| |||||| |||| ||||||||||| |||||||  |||| |    
T  34726326 tcaggccaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgtaaaatttttcgtaggccaggctcaggcctatcaaagcctggcc 34726425  T
Q  124 tggcctgacctatttccatccctaat 149  Q
    ||||||| |||||| ||| |||||||    
T  34726426 tggcctggcctattcccaaccctaat 34726451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 6419960 - 6420071
Alignment:
Q  26 aggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctg 125  Q
    |||||||||| ||||| |||||||| |||||| ||||||||||||| || | ||| | || |||| |||| ||||||||||| ||||||| ||||| |||    
T  6419960 aggtcaggcctagaaatacggcctacgataggccataggccaggctcagacttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggcctg 6420059  T
Q  126 gcctgacctatt 137  Q
    ||||||||||||    
T  6420060 gcctgacctatt 6420071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 21198158 - 21198260
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  21198158 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 21198257  T
Q  145 cta 147  Q
    |||    
T  21198258 cta 21198260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 26260273 - 26260390
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||| |||    
T  26260273 caggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctgacct 26260372  T
Q  130 gacctatttccatcccta 147  Q
    | |||||| ||| |||||    
T  26260373 ggcctattcccaacccta 26260390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 31452883 - 31452996
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    |||||||||||||||||||||| ||||||||||| |||||| || |||||| | |||||||| |||| |||| ||  ||||||| ||||||| ||||| |    
T  31452883 tcaggtcaggccaagaaaaacgacctatgataggccataggtcatgcttagacttgtaaattatttcgtaggccaaactcaggcctatcaaagtctggcc 31452982  T
Q  124 tggcctgacctatt 137  Q
    || |||| ||||||    
T  31452983 tgacctggcctatt 31452996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 36985416 - 36985505
Alignment:
Q  59 cataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatccctaa 148  Q
    ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  ||||||||||||| |||||| ||| ||||||    
T  36985416 cataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggtctggcctggcctattcccaaccctaa 36985505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 6283486 - 6283403
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggc 107  Q
    ||||| |||||||||||||||||||||| || || || |||||||||| |||| ||||||||||||| |||| |||||||||||    
T  6283486 tcaggccaggccaagaaaaacggcctataattggccacaggccaggctcaggcttgtaaattttttcgtaggccaggctcaggc 6283403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 29768411 - 29768289
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| | ||||||| |||||||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  29768411 caggccaggcctagaaaaacggcctatgataggcc-taggccaagcttaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 29768313  T
Q  125 ggcctgacctatttccatccctaa 148  Q
    |||||| |||||| ||| ||||||    
T  29768312 ggcctggcctattaccacccctaa 29768289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 38086718 - 38086611
Alignment:
Q  40 aaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttc 139  Q
    |||||||||||| |||||||||||  ||| ||||||| ||||||||||||| || |||| |||||| | ||||||||| |||||||| ||| ||||| ||    
T  38086718 aaaacggcctataataggtcatagatcagacttaggcttgtaaattttttcgtaagtcaagctcagacctatcaaaatttggtctggtctgccctatatc 38086619  T
Q  140 catcccta 147  Q
    || |||||    
T  38086618 caccccta 38086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 6431626 - 6431516
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||||||||||||||||| |||||||||| || |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||| ||||||||||    
T  6431626 agaaaaacggcctatgataggccataggccagactcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctgacctgacctat 6431527  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  6431526 tcccaccccta 6431516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 22439914 - 22440040
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    |||||||||||||||||||| | ||||||||| | ||||| ||||||| | || ||||||||||||| ||  |||||||| ||| ||| |||  || | |    
T  22439914 tcaggtcaggccaagaaaaatgacctatgataagccatagaccaggctcaagcttgtaaattttttcgtaaatcaggctcgggcctattaaagcctagcc 22440013  T
Q  124 tggcctgacctatttccatccctaata 150  Q
    || |||| |||||||||||||||||||    
T  22440014 tgacctggcctatttccatccctaata 22440040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 25879748 - 25879838
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| | || |||| |||| || |||||||  |||||||    
T  25879748 caggccaggcctagaaaaacggcctatgataggtcataggccaggcttaggcttgtgatttatttcgtaggccaagctcaggtctatcaaa 25879838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 44092822 - 44092932
Alignment:
Q  37 agaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctat 136  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||| | |||||||| |||| |||||||| |||||    
T  44092822 agaaaaatggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcagacctatcaaaacctggcctggcctggcctat 44092921  T
Q  137 ttccatcccta 147  Q
    | ||| |||||    
T  44092922 tcccaccccta 44092932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 38213519 - 38213422
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctgg 121  Q
    ||||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||  |||| ||||||||||| |||||||| ||||    
T  38213519 tcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaatttttttgtaggccaggctcaggcctatcaaaacctgg 38213422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 40737922 - 40737797
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||| ||    
T  40737922 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcct 40737823  T
Q  125 ggcctgacctatttccatccctaata 150  Q
    |||||| |||||| ||| ||||||||    
T  40737822 ggcctggcctattcccaaccctaata 40737797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 29557517 - 29557425
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatt 137  Q
    ||||||||| ||| ||||||| ||||| ||||||| |||||||||| |||| ||||||||||| |||||||  ||| ||||||||| ||||||    
T  29557517 ggcctatgaaaggccataggctaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctgatctggcctggcctatt 29557425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 6283418 - 6283332
Alignment:
Q  61 taggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcccta 147  Q
    ||||||||||| |||| ||||||||||||| |||| ||| |||| || ||||||| ||||| ||||||||||||||| ||| |||||    
T  6283418 taggccaggctcaggcttgtaaattttttcgtaggccagactcaagcctatcaaagtctggcctggcctgacctattcccaccccta 6283332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 12033832 - 12033948
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| ||| |||||  |||| ||||||||||| ||||||| ||||| |||||||    
T  12033832 caggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaattttt-gtaggccaggctcaggcctatcaaagtctggcctggcct 12033930  T
Q  130 gacctatttccatcccta 147  Q
      |||||| ||| |||||    
T  12033931 agcctattcccaacccta 12033948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 42077066 - 42076989
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggc 107  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| |||||||||||    
T  42077066 caggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggc 42076989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 7298939 - 7298844
Alignment:
Q  34 ccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||||||| ||||| ||||| || ||||||| || |||| ||||||||||||| |||| ||| ||||||| |||||||  ||| ||||||||    
T  7298939 ccaagaaaaacgacctataataggccacaggccagactcaggcttgtaaattttttcgtaggccagactcaggcctatcaaagcctgatctggcct 7298844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 7592544 - 7592635
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| | || ||||  ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| |||| |||||||||||||||||||    
T  7592544 tcaggtcagacaaaaaaaataggcctatgaaaggccataggccatgctcaggcctgcaaaatttttcgtaggccaggctcaggcgtatcaaa 7592635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 15899706 - 15899767
Alignment:
Q  28 gtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaatttttt 89  Q
    ||||||||||||||||||  |||||||||| ||||||||||||| |||| ||||| ||||||    
T  15899706 gtcaggccaagaaaaacgatctatgataggccataggccaggctcaggcttgtaattttttt 15899767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 43639085 - 43639008
Alignment:
Q  35 caagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatc 112  Q
    |||||||||||| |||||||||| |||||  |||||| |||| |||||| ||||||||||||||| | ||||| ||||    
T  43639085 caagaaaaacggtctatgataggccatagatcaggctcaggcttgtaaactttttcataggtcagacccaggcctatc 43639008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 5936793 - 5936877
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||| ||| ||||||||||||| ||||||  |||||||||| |||| ||||||| ||| |||||||  |||| |||||||    
T  5936793 ggcctatgaaaggccataggccaggctcaggcctacaaattttttcgtaggccaggctcgggcctatcaaagcctggcctggcct 5936877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 2611385 - 2611295
Alignment:
Q  39 aaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||||||||||||| |||||||||| || || | ||| | || |||| |||||||||||||| | ||||||| ||||  |||||||    
T  2611385 aaaaacggcctatgataggccataggccagactcagacttgtgatttatttcgtaggtcaggctcagacctatcaaagtctgacctggcct 2611295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 43616407 - 43616305
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| |||| ||||| || ||||||| ||| |||||| |||| ||||||||||| ||||||| ||||   ||| ||| |||||||||| ||    
T  43616407 ggcctatgaaaggccataagccagactcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagtctgacatggtctggcctatttccaacc 43616308  T
Q  145 cta 147  Q
    |||    
T  43616307 cta 43616305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 43999655 - 43999725
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||| ||| |||||| |||||| ||||||| ||||||||||||| | ||||||||||  |||||||    
T  43999655 ggcctatgaaaggccataggtcaggctcaggcctgcaaattttttcataagccaggctcaggtctatcaaa 43999725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 17740525 - 17740569
Alignment:
Q  22 tttcaggtcaggccaagaaaaacggcctatgataggtcataggcc 66  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||    
T  17740525 tttcaggccagaccaagaaaaacggcctatgataggccataggcc 17740569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 38448062 - 38448146
Alignment:
Q  53 ataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatt 137  Q
    ||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |||||||| ||||||    
T  38448062 ataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctatt 38448146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 1789 - 1879
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||    
T  1789 caggtcaggcctaaaaaaacggcctatgataggccataggccaggctcaggcctgtaaattttttcgtaggccaggctcaggcctatcaaa 1879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 41902845 - 41902962
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| ||||||| |||||| ||||||    
T  41902845 caggcctagaaaaacggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggtatggcct 41902944  T
Q  130 gacctatttccatcccta 147  Q
    | |||||| |||||||||    
T  41902945 ggcctattcccatcccta 41902962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 33450249 - 33450362
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| | |||||| |||||||||||||| | | ||||| |||||      
T  33450249 tcaggtcaggccaagaaaaacggtctatgataggccataggctaggcttaggcttgtataatttttcgtaggtcaggctcagtcctttcaaagtctggct 33450348  T
Q  124 tggcctgacctatt 137  Q
    |||||| |||||||    
T  33450349 tggccttacctatt 33450362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 14776185 - 14776309
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||  |||| ||    
T  14776185 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcct 14776284  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  14776285 ggcctggcctattcccaaccctaat 14776309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 31377488 - 31377365
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||||||||||||| ||| ||||| || |||| |||||||||| ||||||||||||| |||| |||| |||||| |||||||  |||| |    
T  31377488 tcaggccaggccaagaaaaacggcttataataggccacaggctaggcttaggcttgtaaattttttcgtaggccaggttcaggcctatcaaagcctggcc 31377389  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  31377388 tggcctggcctattcccaccccta 31377365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 2732392 - 2732290
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||  |||| |||||||| |||||| ||| ||    
T  2732392 ggcctatgaaaggccataggccaggctcaggcctgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaacc 2732293  T
Q  145 cta 147  Q
    |||    
T  2732292 cta 2732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 34521245 - 34521369
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| | ||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||  |||| |    
T  34521245 tcaggccaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggtcaggctcaggcctatcaaagcctggcc 34521344  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    || |||| |||||| ||| ||||||    
T  34521345 tgacctggcctattcccaaccctaa 34521369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 41892245 - 41892121
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| ||||| || ||||| ||||||||| ||| ||||||||||||| |||| || |||||||||| || | ||||||||||| ||||||| ||||| ||    
T  41892245 caggccaggcaaaaaaaaaaggcctatgaaaggccataggccaggctcaggcttgcaaattttttcgtaagccaggctcaggcctatcaaagtctggcct 41892146  T
Q  125 ggcctgacctatttccatccctaat 149  Q
    |||||| |||||| ||| |||||||    
T  41892145 ggcctggcctattcccaaccctaat 41892121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 44848139 - 44848016
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||| ||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| |    
T  44848139 tcaggccaggcctagaaaaacggcttatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcttatcaaagcctggcc 44848040  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  44848039 tggcctggcctattcccaccccta 44848016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 2941131 - 2941253
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| |||||||| |||||||||||| |||||| |||||| |||| ||| | || |||  |||||||||||||||| ||||||| ||||| ||    
T  2941131 caggccaggcctagaaaaacagcctatgataggccataggtcaggctcaggcttgtgatttattttgtaggtcaggctcaggcctatcaaagtctggcct 2941230  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  2941231 ggcctggcctattcccaccccta 2941253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 3357082 - 3356960
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||  |||||||||| |||| ||||||||||| |||||||  |||| ||    
T  3357082 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggccttcaaattttttcgtaggccaggctcaggcctatcaaagcctggcct 3356983  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  3356982 ggcctggcctattcccaacccta 3356960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 21806622 - 21806500
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||||||||| |||||||||| || | || ||| | || |||| |||| ||||||||||| |||||||  |||||||    
T  21806622 caggccaggcctagaaaaacggcctatgataggccataggccagactcaagcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggtct 21806523  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  21806522 ggcctggcctattcccaccccta 21806500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 10227977 - 10227868
Alignment:
Q  28 gtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggc 127  Q
    |||| ||| ||||||| |||||||||||||||||||||||| || |||| ||| | || |||| |||| ||||||||||| ||||||| ||||| |||||    
T  10227977 gtcatgcctagaaaaatggcctatgataggtcataggccagactcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagtctggcctggc 10227878  T
Q  128 ctgacctatt 137  Q
    ||| ||||||    
T  10227877 ctggcctatt 10227868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 34002779 - 34002888
Alignment:
Q  28 gtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggc 127  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||  |||| | | |||| || |||||||  ||||||||||    
T  34002779 gtcaggccaagaaaatcggcctataataggtcataggccaggctcaggcttgtaaatttttttgtaggcctgactcaagcctatcaaagcctggtctggc 34002878  T
Q  128 ctgacctatt 137  Q
     || ||||||    
T  34002879 ttggcctatt 34002888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 46191669 - 46191793
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||| | || ||| | || |||| |||||||| ||||||| |||||||  ||||||    
T  46191669 tcaggtcaggcctagaaaaatggcctatgataggccataggccaggctcaagcttgtgatttatttcgtaggtcagactcaggcctatcaaagcctggtc 46191768  T
Q  124 tggcctgacctatttccatccctaa 148  Q
    || |||| | |||| ||| ||||||    
T  46191769 tgacctggcgtattcccacccctaa 46191793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 15757652 - 15757769
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||| | ||||||||||||||||| | ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||  |||||||    
T  15757652 caggcctataaaaacggcctatgataagccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctgacctggcct 15757751  T
Q  130 gacctatttccatcccta 147  Q
    |||||||| ||| |||||    
T  15757752 gacctattcccaccccta 15757769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 12419156 - 12419267
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||| ||||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||||||||||| |||||||  |||| ||    
T  12419156 caggccaggcctagaaaaa-ggcctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcct 12419254  T
Q  125 ggcctgacctatt 137  Q
    |||||| ||||||    
T  12419255 ggcctggcctatt 12419267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 31673640 - 31673556
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||| ||||||||||| | ||| | |||||||||||||||| |||||||||||||||| ||||||| ||| | |||||||    
T  31673640 ggcctatgaaaggtcataggctaagctcaagcctgtaaattttttcgtaggtcaggctcaggcctatcaaagtctagcctggcct 31673556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 1411529 - 1411648
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||||| ||||  ||||||||| ||  ||||||||||||| ||||||| ||| |||||| |||| || |||||||| |||||||  |||| |||||||    
T  1411529 caggccaaaaaaataggcctatgaaagaccataggccaggctcaggcctgcaaaatttttcgtaggccaagctcaggcctatcaaagcctggcctggcct 1411628  T
Q  130 gacctatttccatccctaat 149  Q
    | |||||| ||| |||||||    
T  1411629 ggcctattcccaaccctaat 1411648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 11410644 - 11410521
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||||| | ||  ||||||||| ||| ||||||||||||| ||||||| |||  ||||| |||| ||||||||||| |||||||  |||| |    
T  11410644 tcaggccaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcc 11410545  T
Q  124 tggcctgacctatttccatcccta 147  Q
    ||||||| |||||| ||| |||||    
T  11410544 tggcctggcctattcccaacccta 11410521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 15943121 - 15943243
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||| ||    
T  15943121 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcct 15943220  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  15943221 ggcctggcctattcccaacccta 15943243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 41399713 - 41399803
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| |||||||| ||||  ||||||||| ||  ||||||||||||||||||||| ||| |||||| |||| ||||||||||| |||||||    
T  41399713 caggccaggccaaaaaaataggcctatgaaagaccataggccaggcttaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaa 41399803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 2196167 - 2196042
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| ||| || |||| ||||| |||||||||| ||| ||||||||| || | ||| | || |||| |||| |||  |||||| ||||||| |||||||    
T  2196167 tcaggccagacctagaacaacggtctatgataggccattggccaggctcagacttgtgatttatttcgtaggccagattcaggcctatcaaagtctggtc 2196068  T
Q  124 tggcctgacctatttccatccctaat 149  Q
    |||||||||||||| ||| |||||||    
T  2196067 tggcctgacctattcccaaccctaat 2196042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 23671153 - 23671270
Alignment:
Q  30 caggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    |||||| ||||||| | ||||||||||| ||||||||||||| |||| ||| | || |||| |||| ||| || |||| ||||||| ||||| |||||||    
T  23671153 caggcctagaaaaatgacctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccagacttaggcctatcaaagtctggcctggcct 23671252  T
Q  130 gacctatttccatcccta 147  Q
    | |||||| ||| |||||    
T  23671253 ggcctattcccaccccta 23671270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 44410046 - 44410151
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||||||  ||||||||||||| |||||||||| ||||| | |||||||||||||||| ||||||  ||   || | |||||| ||||||||||||| |    
T  44410046 tcaggtcaaaccaagaaaaacggtctatgataggccatagactaggcttaggcctgtaattttttttgtataccaaggtcaggcctatcaaaatctggcc 44410145  T
Q  124 tggcct 129  Q
    ||||||    
T  44410146 tggcct 44410151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 18533386 - 18533470
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcct 129  Q
    ||||||||| ||||||||||| ||||| ||| ||| |||||||||| |||| ||||||||||| |||||||  |||| |||||||    
T  18533386 ggcctatgaaaggtcataggctaggctcaggtctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcct 18533470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 21441965 - 21442069
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||||||||| ||||| |||||||||| ||||||| ||||| || |||| |||| |||||| || | |||||||  |||| ||    
T  21441965 caggccaggcctagaaaaacggcctataataggccataggccagacttaggcttgtaatttatttcgtaggccaggcttagacctatcaaagcctggcct 21442064  T
Q  125 ggcct 129  Q
    |||||    
T  21442065 ggcct 21442069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 43596177 - 43596289
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||| ||||||||  ||||||||||| ||||||||||||| |||| ||| | || |||| |||| || |||||||| |||||||  |||| ||    
T  43596177 caggccaggcctagaaaaacaacctatgataggccataggccaggctcaggcttgtgatttatttcgtaggccaagctcaggcctatcaaagcctggcct 43596276  T
Q  125 ggcctgacctatt 137  Q
    |||||| ||||||    
T  43596277 ggcctggcctatt 43596289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 48214185 - 48214107
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctc 103  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| |||||||    
T  48214185 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctc 48214107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 13391177 - 13391064
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| || ||| |||||||  |||||||||||| ||||||||||||| |||| ||| | || |||  |||| ||||||||||| |||||||  |||| |    
T  13391177 tcaggccatgcctagaaaaatagcctatgataggccataggccaggctcaggcttgtgatttattttgtaggccaggctcaggcctatcaaagcctggcc 13391078  T
Q  124 tggcctgacctatt 137  Q
    ||||||| ||||||    
T  13391077 tggcctggcctatt 13391064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 5667198 - 5667102
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctgg 121  Q
    |||| |||||| ||||||||||||||||||||| ||||| || |||| || | ||| | || |||| |||| ||||||||||| |||||||| ||||    
T  5667198 caggccaggcctagaaaaacggcctatgataggccatagacctggctcagacttgtgatttatttcttaggccaggctcaggcctatcaaaacctgg 5667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 41631568 - 41631615
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggct 71  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  41631568 tcaggccaggcctagaaaaacggcctatgataggtcataggtcaggct 41631615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 28489356 - 28489286
Alignment:
Q  31 aggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggc 101  Q
    |||||||||||||||| |||||||||| ||||||| ||||| | || || |||||||||| |||| |||||    
T  28489356 aggccaagaaaaacggtctatgataggccataggctaggctcaagcttggaaattttttcgtaggccaggc 28489286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 43341293 - 43341259
Alignment:
Q  33 gccaagaaaaacggcctatgataggtcataggcca 67  Q
    |||||||||||||||||||||||||||||||||||    
T  43341293 gccaagaaaaacggcctatgataggtcataggcca 43341259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 27595638 - 27595760
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtc 123  Q
    ||||| |||||| ||||||||||| ||||||||| |||||| |||||| |||| ||| | || |||| |||  ||  ||||||| ||||||| ||||  |    
T  27595638 tcaggccaggcctagaaaaacggcatatgataggccatagg-caggctcaggcttgtgatttatttcgtagaccatactcaggcctatcaaagtctgacc 27595736  T
Q  124 tggcctgacctatttccatcccta 147  Q
    || ||||||||||| ||| |||||    
T  27595737 tgacctgacctattcccaccccta 27595760  T

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Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 32584941 - 32584850
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| ||| || |||||||||||||||||||||  |||| ||||||| |||| ||| | || |||  |||| ||||||||||| |||||||    
T  32584941 tcaggccagacctagaaaaacggcctatgataggctatagtccaggctcaggcttgtgatttattttgtaggccaggctcaggcctatcaaa 32584850  T

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Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 8485948 - 8486001
Alignment:
Q  62 aggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    |||| ||||| ||||||| |||||||||| |||| ||||||||||| |||||||    
T  8485948 aggctaggctgaggcctgcaaattttttcgtaggccaggctcaggcctatcaaa 8486001  T

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Target: scaffold0037 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 81362 - 81464
Alignment:
Q  45 ggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtctggcctgacctatttccatcc 144  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||| |||| |||||||| || |||||||  |||| |||||||| |||||| ||| ||    
T  81362 ggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaagcctatcaaagcctggcctggcctggcctattcccaacc 81461  T
Q  145 cta 147  Q
    |||    
T  81462 cta 81464  T

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Target: scaffold0129 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 41022 - 40900
Alignment:
Q  25 caggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaaatctggtct 124  Q
    |||| |||||||| ||||  ||||||||| ||| ||||||||||||| ||||||| |||   |||| |||| ||||||||||| |||||||  |||| ||    
T  41022 caggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcct 40923  T
Q  125 ggcctgacctatttccatcccta 147  Q
    |||||| |||||| ||| |||||    
T  40922 ggcctggcctattcccaacccta 40900  T

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Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 40097 - 40006
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcctgtaaattttttcataggtcaggctcaggcgtatcaaa 115  Q
    ||||| || ||||| ||||  ||||||||| ||| ||||||||||||| ||||||| || ||||||| |||| |||||||| || |||||||    
T  40097 tcaggccatgccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaatttttttcgtaggccaggctcaagcctatcaaa 40006  T

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Target: scaffold0422 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 10730 - 10676
Alignment:
Q  24 tcaggtcaggccaagaaaaacggcctatgataggtcataggccaggcttaggcct 78  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||| ||||||    
T  10730 tcaggccaggccaagaaaaacggcctataataggccacaggccaggctcaggcct 10676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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