View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0449_low_12 (Length: 283)
Name: NF0449_low_12
Description: NF0449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0449_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4953774 - 4954028
Alignment:
| Q |
8 |
atcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaa |
107 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953774 |
atcaattaaactaccagataacataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaatacaactcgaaa |
4953873 |
T |
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| Q |
108 |
tatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtt |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4953874 |
tatgagctgtcagatctttatggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttggggagtt |
4953973 |
T |
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| Q |
208 |
taagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
262 |
Q |
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| T |
4953974 |
tgagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4954028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4938065 - 4938319
Alignment:
| Q |
8 |
atcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaa |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938065 |
atcaattaaactaccagataacataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaa |
4938164 |
T |
|
| Q |
108 |
tatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtt |
207 |
Q |
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|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
4938165 |
tatgagccgtcggatctttatggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggtttggggagtt |
4938264 |
T |
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| Q |
208 |
taagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
262 |
Q |
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| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938265 |
tgagatgatatggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4938319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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