View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0449_low_15 (Length: 250)
Name: NF0449_low_15
Description: NF0449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0449_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4953753 - 4953522
Alignment:
| Q |
1 |
taatttaaaactagaatttgtaatttttgtttctgcaattattttttaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953753 |
taatttaaaactagaatttgtaatttttgtttctgcaattattttttaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttat |
4953654 |
T |
|
| Q |
101 |
acattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgttcttttttacttcattttgtta |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4953653 |
acattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgtttttttttacttcattttgtta |
4953554 |
T |
|
| Q |
201 |
ggtatacaagcccaactgatatgatgatgtcc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4953553 |
ggtatacaagcccaactgatatgatgatgtcc |
4953522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4938044 - 4937813
Alignment:
| Q |
1 |
taatttaaaactagaatttgtaatttttgtttctgcaattattttttaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938044 |
taatttaaaactagaatttgtaatttttgtttctgcaattatttttaaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttat |
4937945 |
T |
|
| Q |
101 |
acattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgttcttttttacttcattttgtta |
200 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4937944 |
acattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgttattttttacttcattttgtta |
4937845 |
T |
|
| Q |
201 |
ggtatacaagcccaactgatatgatgatgtcc |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
4937844 |
ggtatacaagcccaactgatatgatgatgtcc |
4937813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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