View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0449_low_4 (Length: 368)
Name: NF0449_low_4
Description: NF0449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0449_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 17664156 - 17664268
Alignment:
| Q |
30 |
actttcccctttccgcttcttcgtgtagtatgaatatgtaaagtgtaaaccaaataatatctgaaaagaagtagagtgtttctgaaaagagtcaacagag |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17664156 |
actttcccctttctgcttcttcgtgtagtatgaatatgtaaagtgtaaaccaaataatatctgaaaagaagtagagtgtttctgaaaagagtcaacag-g |
17664254 |
T |
|
| Q |
130 |
ttggttgattgaat |
143 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17664255 |
ttggttgattgaat |
17664268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 17664348 - 17664395
Alignment:
| Q |
153 |
agtttagcagaagaaaatgaagtctgcattagttaatttcaagcattt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
17664348 |
agtttagcagaagaaagtgaagtctgaattagttaatttcaagcattt |
17664395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 17699795 - 17699758
Alignment:
| Q |
73 |
tgtaaaccaaataatatctgaaaagaagtagagtgttt |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17699795 |
tgtaaaccaaataatatctcaaaagaagtagagtgttt |
17699758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 29708826 - 29708858
Alignment:
| Q |
159 |
gcagaagaaaatgaagtctgcattagttaattt |
191 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
29708826 |
gcagaagaaactgaagtctgcattagttaattt |
29708858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1473 times since January 2019
Visitors: 3230