View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0449_low_6 (Length: 360)

Name: NF0449_low_6
Description: NF0449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0449_low_6
NF0449_low_6
[»] chr7 (1 HSPs)
chr7 (108-360)||(35348172-35348424)
[»] chr6 (1 HSPs)
chr6 (108-360)||(2275230-2275482)
[»] chr5 (1 HSPs)
chr5 (108-360)||(39346720-39346972)
[»] chr1 (2 HSPs)
chr1 (108-360)||(4012564-4012816)
chr1 (108-360)||(25879434-25879684)
[»] chr2 (1 HSPs)
chr2 (108-360)||(10789717-10789967)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 35348172 - 35348424
Alignment:
Q  108 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35348172 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 35348271  T
Q  208 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg 307  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||    
T  35348272 aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg 35348371  T
Q  308 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35348372 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 35348424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 2275230 - 2275482
Alignment:
Q  108 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2275230 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 2275329  T
Q  208 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg 307  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||    
T  2275330 aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg 2275429  T
Q  308 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2275430 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 2275482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 39346720 - 39346972
Alignment:
Q  108 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39346720 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 39346819  T
Q  208 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg 307  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||    
T  39346820 aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg 39346919  T
Q  308 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39346920 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 39346972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 4012564 - 4012816
Alignment:
Q  108 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4012564 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 4012663  T
Q  208 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg 307  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||    
T  4012664 aaagttgtttttataggtaaaatatatgatctgaatatttagcttatgaatattgttttggcagaaatgatttcatttttttcaaagttggttgtgccgg 4012763  T
Q  308 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4012764 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 4012816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 25879434 - 25879684
Alignment:
Q  108 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  25879434 cagagagtgaagtagtatacagtagtgattttaaaattagtattgaaaagtatagcattgcatttagcaagttgtattcttttgtgtaatattaaaaagt 25879533  T
Q  208 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||        |||||||||| |||||     
T  25879534 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatactgttttggtagaaatgattgcattttttt-aaagttggttatgccga 25879632  T
Q  308 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 360  Q
    |||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  25879633 cactatcta-taatgtagtttcaatcaaaattgtgatggctgaaggatttttt 25879684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 108 - 360
Target Start/End: Complemental strand, 10789967 - 10789717
Alignment:
Q  108 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagaaagttgtattcttatgtgtaatattaaaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  10789967 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaaagtatagcattgcatttagcaagttgtattcttttgtgtaatattaaaaagt 10789868  T
Q  208 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgtttgggcagaaatgatttcannnnnnncaaagttggttgtgccgg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||       ||||||||||| ||||||    
T  10789867 aaagttgtttttataggtaaaatatatgatctgaatgtttagcttatgaatattgttttggcagaaatgattgca-ttttttcaaagttggttatgccgg 10789769  T
Q  308 cactatctaggtatgtagtttcaatcaaaattgtgatggctgaaggatttttt 360  Q
    |||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  10789768 cactatcta-taatgtagtttcaatcaaaattgtgatggctgaaggatttttt 10789717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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