View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0450_high_5 (Length: 304)
Name: NF0450_high_5
Description: NF0450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0450_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 44256746 - 44256994
Alignment:
| Q |
30 |
gtgctgacattggcggaacggaggagagagagttgacgttggtcaacgttagtgtaaacgaggaagagatggttgctcatagcgtggcctaatacggcat |
129 |
Q |
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| T |
44256746 |
gtgctgacattggcggaacggaggagagagagttgacgttggtcaacgttagtgtaaacgaggaagagatggttgctgatagcgtggcctaatacggcat |
44256845 |
T |
|
| Q |
130 |
cgccgatgaactcgagacgttcataggaaacggattcggggtaagaagagtgggttaaagcttcttctagaaggttcttgtttctgaaggtgtacccgat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44256846 |
cgccgatgaactcgagacgttcataggaaacggattcggggtaagaagagtgggttaaagcttcttctagaaggttcttgtttctgaaggtgtacccgat |
44256945 |
T |
|
| Q |
230 |
tatcttctccactgctgcaacagaatcttccatcttcatcttcatattc |
278 |
Q |
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| T |
44256946 |
tatcttctccactgctgcaacagaatcttccatcttcatcttcatattc |
44256994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 20473431 - 20473568
Alignment:
| Q |
137 |
gaactcgagacgttcataggaaacggattcggggtaagaagagtgggttaaagcttcttctagaaggttcttgtttctgaaggtgtacccgattatcttc |
236 |
Q |
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||||||||||||||| |||||||| |||||||||||||||| |||||||| ||| ||||||||||| |||||||| ||| ||||| |||||||||||| |
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| T |
20473431 |
gaactcgagacgttcgtaggaaacagattcggggtaagaagtgtgggttagagcatcttctagaagcttcttgttgaggaatgtgtagccgattatcttc |
20473530 |
T |
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| Q |
237 |
tccactgctgcaacagaatcttccatcttcatcttcat |
274 |
Q |
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| T |
20473531 |
tccactgctgcaactgaagcttccatctccattttcat |
20473568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 20475090 - 20474954
Alignment:
| Q |
137 |
gaactcgagacgttcataggaaacggattcggggtaagaagagtgggttaaagcttcttctagaaggttcttgtttctgaaggtgtacccgattatcttc |
236 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| || ||||| || ||||||| ||| |||||||| ||| ||||| || |||||||| |
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| T |
20475090 |
gaactcgagacgttcgtaggaaacggattcggggtaagaagtatgagttaatgcatcttcta-aagcttcttgttgaggaatgtgtagccaattatcttt |
20474992 |
T |
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| Q |
237 |
tccactgctgcaacagaatcttccatcttcatcttcat |
274 |
Q |
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||||||||||||| ||| ||||||||| ||||||||| |
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| T |
20474991 |
tccactgctgcaattgaaccttccatctccatcttcat |
20474954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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