View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0450_low_11 (Length: 267)

Name: NF0450_low_11
Description: NF0450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0450_low_11
NF0450_low_11
[»] chr4 (20 HSPs)
chr4 (1-253)||(39331133-39331384)
chr4 (157-217)||(7616957-7617017)
chr4 (135-204)||(12922186-12922255)
chr4 (157-250)||(46804987-46805080)
chr4 (157-252)||(971887-971981)
chr4 (164-205)||(25855282-25855323)
chr4 (177-252)||(4161851-4161927)
chr4 (135-217)||(13834513-13834595)
chr4 (176-253)||(27395479-27395557)
chr4 (113-210)||(42375244-42375341)
chr4 (215-251)||(46433550-46433586)
chr4 (157-252)||(48973371-48973467)
chr4 (167-210)||(22467250-22467293)
chr4 (167-206)||(32934155-32934194)
chr4 (183-236)||(35075822-35075876)
chr4 (171-251)||(7912534-7912615)
chr4 (158-207)||(21241804-21241853)
chr4 (110-190)||(24806760-24806840)
chr4 (115-188)||(26499279-26499352)
chr4 (157-205)||(51226123-51226171)
[»] scaffold0687 (1 HSPs)
scaffold0687 (157-252)||(1619-1715)
[»] chr8 (15 HSPs)
chr8 (157-252)||(7603935-7604031)
chr8 (135-217)||(4586770-4586852)
chr8 (157-210)||(40680074-40680127)
chr8 (164-248)||(41616690-41616775)
chr8 (157-216)||(21215940-21215999)
chr8 (167-225)||(29908950-29909009)
chr8 (167-252)||(42844884-42844970)
chr8 (167-217)||(7681014-7681064)
chr8 (115-217)||(8340310-8340411)
chr8 (135-205)||(42660085-42660155)
chr8 (176-209)||(6049172-6049205)
chr8 (176-205)||(35447600-35447629)
chr8 (176-248)||(44362626-44362699)
chr8 (157-217)||(12530791-12530851)
chr8 (157-205)||(18080463-18080511)
[»] chr7 (15 HSPs)
chr7 (159-217)||(8929495-8929553)
chr7 (157-210)||(23441495-23441548)
chr7 (154-221)||(20889211-20889278)
chr7 (167-217)||(46720021-46720071)
chr7 (125-206)||(12849733-12849814)
chr7 (157-206)||(23457830-23457879)
chr7 (157-210)||(23474549-23474602)
chr7 (113-193)||(39608609-39608689)
chr7 (123-206)||(8062885-8062968)
chr7 (167-217)||(10228752-10228802)
chr7 (167-217)||(24127206-24127256)
chr7 (157-210)||(23532887-23532940)
chr7 (176-205)||(29197172-29197201)
chr7 (167-199)||(30793161-30793193)
chr7 (163-203)||(43576486-43576526)
[»] chr1 (13 HSPs)
chr1 (116-252)||(33747270-33747407)
chr1 (135-252)||(27900871-27900989)
chr1 (157-207)||(38445183-38445233)
chr1 (157-205)||(29795276-29795324)
chr1 (115-199)||(39162406-39162490)
chr1 (163-210)||(21379283-21379330)
chr1 (164-207)||(31415068-31415111)
chr1 (162-201)||(43115654-43115693)
chr1 (170-205)||(45679559-45679594)
chr1 (167-217)||(51849558-51849608)
chr1 (157-190)||(2262183-2262216)
chr1 (176-217)||(10018969-10019010)
chr1 (166-253)||(45679705-45679793)
[»] chr3 (13 HSPs)
chr3 (167-210)||(47944560-47944603)
chr3 (113-252)||(14984405-14984544)
chr3 (157-252)||(23195690-23195786)
chr3 (157-221)||(45681387-45681451)
chr3 (167-217)||(47944335-47944385)
chr3 (165-210)||(32536464-32536509)
chr3 (112-188)||(7672334-7672410)
chr3 (115-206)||(30843819-30843910)
chr3 (165-215)||(39336789-39336839)
chr3 (215-252)||(20936486-20936523)
chr3 (215-252)||(29079235-29079272)
chr3 (164-217)||(52330622-52330675)
chr3 (165-217)||(22235487-22235539)
[»] chr2 (11 HSPs)
chr2 (115-252)||(40124264-40124402)
chr2 (161-252)||(12676427-12676519)
chr2 (157-217)||(19206506-19206566)
chr2 (176-215)||(6686797-6686836)
chr2 (157-215)||(6788492-6788550)
chr2 (136-206)||(7165761-7165831)
chr2 (176-217)||(20966220-20966261)
chr2 (157-201)||(1517582-1517626)
chr2 (157-201)||(18858011-18858055)
chr2 (157-205)||(18903185-18903233)
chr2 (167-203)||(29488709-29488745)
[»] chr6 (9 HSPs)
chr6 (167-252)||(9307432-9307517)
chr6 (135-210)||(9307250-9307325)
chr6 (160-205)||(31315298-31315343)
chr6 (165-217)||(25085089-25085141)
chr6 (166-205)||(9762629-9762668)
chr6 (158-250)||(4964258-4964351)
chr6 (163-200)||(30000001-30000038)
chr6 (164-217)||(31803956-31804009)
chr6 (161-217)||(28995539-28995595)
[»] scaffold0050 (1 HSPs)
scaffold0050 (169-217)||(81349-81397)
[»] chr5 (14 HSPs)
chr5 (167-250)||(23159081-23159165)
chr5 (157-217)||(42932827-42932887)
chr5 (161-206)||(296546-296591)
chr5 (165-201)||(3599845-3599881)
chr5 (164-203)||(13200852-13200891)
chr5 (135-217)||(8206297-8206379)
chr5 (158-200)||(37269117-37269159)
chr5 (158-190)||(9577097-9577129)
chr5 (171-242)||(14461750-14461822)
chr5 (171-203)||(19342534-19342566)
chr5 (115-203)||(26675287-26675375)
chr5 (115-203)||(26946895-26946983)
chr5 (125-205)||(27001402-27001482)
chr5 (161-217)||(42525231-42525287)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 39331384 - 39331133
Alignment:
Q  1 ccaattttacaaccctacaaacaatagtatacgagtacctttcctaatcgttttacacacnnnnnnngaagtggcaagcaatggccatttgcatggtacg 100  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  39331384 ccaattttacaaccctccaaacaatagtatccgagtacctttcctaatcgttttacacacaaaaaa-gaagtggcaagcaatggccatttgcatggtacg 39331286  T
Q  101 taggtggaatgagataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgt 200  Q
    || ||||||||  ||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39331285 tacgtggaatggaataataatcattttgattcttgaatttgtaataagcagcgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgt 39331186  T
Q  201 gcacttcgtttgtcaaatagttcatgatattaaaatgtttcattaatattgtt 253  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  39331185 gcacttcgtttgtcaaatagtccatgatattaaaatgcttcattaatattgtt 39331133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 7617017 - 7616957
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||    
T  7617017 atagtcttttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaa 7616957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 12922186 - 12922255
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcac 204  Q
    |||||||||||||| ||| || ||||| ||| ||||||| ||||||| ||||||||||||||||||||||    
T  12922186 gaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagtttttgattgtgcac 12922255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 46805080 - 46804987
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatatt 250  Q
    ||||||||| ||| |||| |||||||||||| || | ||||||||| ||||||| |||||| |||| | |||||||||||| |||||||||||||    
T  46805080 atagtctttcaatatattaaaattttaaaattgtctctgattgtgc-cttcgttggtcaaaatagtccctgatattaaaatatttcattaatatt 46804987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 971887 - 971981
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 252  Q
    |||||| || |||||||  |||||| |||||||| ||||||||||||||| ||| |||||| ||||  ||||||||  |||||||||||||||||||    
T  971887 atagtcattcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaagtagtctatgatatt--aatgtttcattaatattgt 971981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 25855323 - 25855282
Alignment:
Q  164 tttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  25855323 tttaatgtattgaaattttaaaatagtctttgattgtgcact 25855282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 4161927 - 4161851
Alignment:
Q  177 aattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||| ||||||| || |||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||    
T  4161927 aattttacaatagttattaattgtgcattttgttagtcaaaatagtctatgatattaaaatgtttcattaatattgt 4161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 13834595 - 13834513
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||| || ||| || | |||||||||||||||| ||||||||||||||| | ||||| | |||||| || ||||||    
T  13834595 gaatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaa 13834513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 27395479 - 27395557
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgtt 253  Q
    ||||||||||||| | ||||||||| ||||||||| ||| ||||| | | ||||||||||||||| | |||||||||||    
T  27395479 aaattttaaaataatatttgattgttcacttcgttagtcaaaataatccttgatattaaaatgttacgttaatattgtt 27395557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 42375341 - 42375244
Alignment:
Q  113 gataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    ||||||| |||||||| || | ||||||||||| || ||  || ||| |  |||||||||| ||||||| ||| |||||||||||| |||||||||||    
T  42375341 gataatagtcattttgattattgaatgtgtaatgagtagccacaataattctttaatgtatcgaaatttcaaagtagtttttgattctgcacttcgtt 42375244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 46433586 - 46433550
Alignment:
Q  215 aaatagttcatgatattaaaatgtttcattaatattg 251  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46433586 aaatagttcctgatattaaaatgtttcattaatattg 46433550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 48973467 - 48973371
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||| ||||||   |||||| ||||||||  ||||||||||| ||| ||  ||||| |||||| |||| |||||||| ||||||||||||||    
T  48973467 atagtctttcaatgtacaaaaatttcaaaatagtccttgattgtgcaattcattaatcaaaatagttcttgatgttaaaatgcttcattaatattgt 48973371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 22467250 - 22467293
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||    
T  22467250 aatgtattgaaatttgaaaatagtctttaattgtgcacttcgtt 22467293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 32934194 - 32934155
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  32934194 aatgtatcaaaattttaaaatagtttttgattgtgcactt 32934155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 35075876 - 35075822
Alignment:
Q  183 aaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaat 236  Q
    |||||| || |||||||||||||||||| |||||| |||||||||| ||||||||    
T  35075876 aaaataattcttgattgtgcacttcgttagtcaaactagttcatgacattaaaat 35075822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 7912534 - 7912615
Alignment:
Q  171 tattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattg 251  Q
    |||||||||||| ||||||| | | ||||||||||||  | ||| ||||||| | | ||||||||||| |||||||||||||    
T  7912534 tattgaaattttgaaatagtctctaattgtgcacttcactagtcaaaatagtccctcatattaaaatgcttcattaatattg 7912615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 21241853 - 21241804
Alignment:
Q  158 tagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttc 207  Q
    ||||| ||| ||||||  |||||||||||||||||| |||||||||||||    
T  21241853 tagtcctttgatgtatcaaaattttaaaatagttttcgattgtgcacttc 21241804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 24806840 - 24806760
Alignment:
Q  110 tgagataataatcattttggt-tctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagt 190  Q
    |||| ||||| |||||||||| ||| ||||| |||||||| ||| || ||||||  ||||||||||||||||| ||||||||    
T  24806840 tgaggtaatagtcattttggtatct-gaatgcgtaataagtagttacaatagtcccttaatgtattgaaatttgaaaatagt 24806760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 26499279 - 26499352
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaata 188  Q
    ||||| ||||||||||||  |||||||||| ||| ||| || ||| ||| |||||||||| ||||| |||||||    
T  26499279 taatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaata 26499352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 51226171 - 51226123
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||| ||||||| |||||| |||||| ||| |||||||||||||    
T  51226171 atagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcact 51226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 1619 - 1715
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||||   | ||||| |||||| |||||||||||||    
T  1619 atagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgt 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 7603935 - 7604031
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||||   | ||||| |||||| |||||||||||||    
T  7603935 atagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgt 7604031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 4586770 - 4586852
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||  || ||| || ||||||| |||||||||| ||||||||||||||| | ||||| ||||||||||| ||||||    
T  4586770 gaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaa 4586852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 40680074 - 40680127
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||||||    
T  40680074 atagtcttttaatgtatcaaaattctaaaatagtttatgattgtgcacttcgtt 40680127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 41616690 - 41616775
Alignment:
Q  164 tttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaata 248  Q
    ||||||||||||||||||||||||| | |||  || ||||||||||| ||| |||||||  | ||||||||||||||| |||||||    
T  41616690 tttaatgtattgaaattttaaaataatcttttgttatgcacttcgttagtcaaaatagtctacgatattaaaatgttttattaata 41616775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 21215940 - 21215999
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaa 216  Q
    |||||| || ||||||||||||||| ||||||||  |||||||||||||||||| |||||    
T  21215940 atagtccttcaatgtattgaaatttcaaaatagtcattgattgtgcacttcgttagtcaa 21215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 29908950 - 29909009
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcat 225  Q
    ||||||||||||||||||||||||| ||||||||||| || ||| ||| |||||||||||    
T  29908950 aatgtattgaaattttaaaatagttattgattgtgcatttggttagtcaaaatagttcat 29909009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 42844884 - 42844970
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 252  Q
    |||||||  |||||||  |||||  ||||||||| |||||  || |||||| |||||| ||||||||||||||||||||||||||||    
T  42844884 aatgtatcaaaattttcgaataggctttgattgtacacttaattagtcaaaatagttcctgatattaaaatgtttcattaatattgt 42844970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 7681064 - 7681014
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||  ||||||||||||||| |||||||||||| |||||| ||||||    
T  7681064 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaa 7681014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 8340411 - 8340310
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc 214  Q
    ||||| ||||||||||||| |||||| |||| || ||| || | |||| ||||||||| | ||| || |||||| |||||||||||||| |||| | |||    
T  8340411 taatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgta-tcaaaattcaaaataatttttgattgtgcatttcgctagtc 8340313  T
Q  215 aaa 217  Q
    |||    
T  8340312 aaa 8340310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 42660155 - 42660085
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    |||||||| ||||| ||| |  ||||||| |||||||||| | ||||||||||||| ||||||| ||||||    
T  42660155 gaatgtgtcataagtagtcagaatagtctcttaatgtattaagattttaaaatagtctttgattatgcact 42660085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 6049205 - 6049172
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcacttcgt 209  Q
    |||||||||||||||| |||||||||||||||||    
T  6049205 aaattttaaaatagttcttgattgtgcacttcgt 6049172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 35447600 - 35447629
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||||||||||||||||||||||||    
T  35447600 aaattttaaaatagtttttgattgtgcact 35447629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 44362699 - 44362626
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaata 248  Q
    ||||||||||||||||| |||||||| | |||||| ||| |||||||  || || ||||||| |||||||||||    
T  44362699 aaattttaaaatagtttctgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaata 44362626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 12530851 - 12530791
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||| ||||||||||| |||||||||||||| | | ||||||||||  ||||| ||||||    
T  12530851 atagttttttaatgtatcgaaattttaaaataatatctgattgtgcaactcgttagtcaaa 12530791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 18080511 - 18080463
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||||| |||||||||  |||||| |||||| ||||||||||||||||    
T  18080511 atagtctcttaatgtatcaaaatttcaaaatattttttgattgtgcact 18080463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 8929495 - 8929553
Alignment:
Q  159 agtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||    
T  8929495 agtcttttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaa 8929553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 23441495 - 23441548
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||| || ||||||| ||||||||||||||||| ||||||||||||||||||    
T  23441495 atagtccttcaatgtatcgaaattttaaaatagttattgattgtgcacttcgtt 23441548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 20889211 - 20889278
Alignment:
Q  154 accatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaatagt 221  Q
    |||||||| | ||||||| | |||||||||||||||| ||| |||||||||| |||| ||||||||||    
T  20889211 accatagtatattaatgtgtcgaaattttaaaatagtctttaattgtgcactgcgttagtcaaatagt 20889278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 46720071 - 46720021
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||||||||||||| || ||||||||||||||| ||| ||||||    
T  46720071 aatgtattgaaattttaaaatggtatttgattgtgcactttgttagtcaaa 46720021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 12849814 - 12849733
Alignment:
Q  125 tttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    ||||||||| ||||||| ||| || ||| || |||||||||||||||||  |||||  |||||||| | |||||||||||||    
T  12849814 tttggttcttgaatgtgcaatgagtagtcacaatagtcttttaatgtatcaaaattacaaaatagtctctgattgtgcactt 12849733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 23457879 - 23457830
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    |||||| || ||||||| ||||||||||||||||| ||||||||||||||    
T  23457879 atagtccttcaatgtatcgaaattttaaaatagttattgattgtgcactt 23457830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 23474549 - 23474602
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||| || |||||||  |||||||||||||||| ||||||||||||||||||    
T  23474549 atagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgtt 23474602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 39608689 - 39608609
Alignment:
Q  113 gataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttt 193  Q
    ||||||||||||||| || || ||||||||||  || ||| || ||||| ||| |||||||  ||||||||||||||||||    
T  39608689 gataataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagtttt 39608609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 8062968 - 8062885
Alignment:
Q  123 attttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    |||||||| || ||||||||||  || ||| || ||||||| | |||||||| ||||||||||||||| | ||||| |||||||    
T  8062968 attttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctgattttgcactt 8062885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 10228752 - 10228802
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||| ||||||| |||||||| |||||||||||| |||||| ||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaa 10228802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 24127206 - 24127256
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||||||| ||||| |||| |||||||||||| ||||| ||||||    
T  24127206 aatgtattgaaattctaaaaaagttcttgattgtgcacctcgttagtcaaa 24127256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 23532887 - 23532940
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||| || || |||| ||||||||||||||||| ||||||||| ||||||||    
T  23532887 atagtccttcaaggtatcgaaattttaaaatagttattgattgtggacttcgtt 23532940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 29197201 - 29197172
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||||||||||||||||||||||||    
T  29197201 aaattttaaaatagtttttgattgtgcact 29197172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 30793193 - 30793161
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattg 199  Q
    |||||||||||||||||||||||||||| ||||    
T  30793193 aatgtattgaaattttaaaatagtttttaattg 30793161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 43576526 - 43576486
Alignment:
Q  163 ttttaatgtattgaaattttaaaatagtttttgattgtgca 203  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  43576526 ttttaatgtattaaaatttaaaaatagttgttgattgtgca 43576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 33747270 - 33747407
Alignment:
Q  116 aataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc- 214  Q
    |||||| |||||||  || |||||||||| ||| ||| || |||||  || ||||||| ||||||| |||| ||| ||||||| ||||||||||| |||     
T  33747270 aataattattttggaccttgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtca 33747369  T
Q  215 aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    |||||||   ||||||||||||| | ||||||||||||    
T  33747370 aaatagtctctgatattaaaatgctccattaatattgt 33747407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 27900989 - 27900871
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaa 233  Q
    ||||||||||| || ||| |  |||||| || |||||||  ||| ||||||||||| | |||||||||| || ||| ||| ||||||| |||||  ||||    
T  27900989 gaatgtgtaatgagtagtcagaatagtccttcaatgtataaaaaatttaaaatagtctatgattgtgcaattagttagtcgaaatagtccatgacgttaa 27900890  T
Q  234 aatgtttcattaatattgt 252  Q
    |||||||||||||||||||    
T  27900889 aatgtttcattaatattgt 27900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 38445233 - 38445183
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttc 207  Q
    |||||| |||||||||| |||||| ||||||||| ||||||||||||||||    
T  38445233 atagtcctttaatgtatcgaaattctaaaatagtctttgattgtgcacttc 38445183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 29795324 - 29795276
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||||||| |||  ||||||||||||||| ||||||||||||||    
T  29795324 atagtcttttaatatatcaaaattttaaaatagtatttgattgtgcact 29795276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 39162406 - 39162490
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattg 199  Q
    ||||| |||||||||| || ||||| ||||| || | | || |||||  || ||||||||||||||| |||||||||||||||||    
T  39162406 taatagtcattttggtccttgaatgcgtaatgagtaatcacaatagtacttcaatgtattgaaatttcaaaatagtttttgattg 39162490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 21379283 - 21379330
Alignment:
Q  163 ttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    ||||||| |||| |||| |||||||||||||||| |||||||||||||    
T  21379283 ttttaatatatttaaatattaaaatagtttttgaatgtgcacttcgtt 21379330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 31415111 - 31415068
Alignment:
Q  164 tttaatgtattgaaattttaaaatagtttttgattgtgcacttc 207  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  31415111 tttaatgtatttaaattttaaaatagtatttgattgtgtacttc 31415068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 43115654 - 43115693
Alignment:
Q  162 cttttaatgtattgaaattttaaaatagtttttgattgtg 201  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  43115654 cttttagtatattgaaattttaaaatagtttttgattgtg 43115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 45679559 - 45679594
Alignment:
Q  170 gtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||| ||||||||||||||||||||||||||||||    
T  45679559 gtattaaaattttaaaatagtttttgattgtgcact 45679594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 51849608 - 51849558
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||| ||||||||||||||||| ||||||| |||||| || ||||||    
T  51849608 aatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaa 51849558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 2262216 - 2262183
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagt 190  Q
    |||||| |||||||||||||||||||||||||||    
T  2262216 atagtcctttaatgtattgaaattttaaaatagt 2262183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 10019010 - 10018969
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  10019010 aaattttaaaatagtttttgattgtgtacttctttagtcaaa 10018969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 45679793 - 45679705
Alignment:
Q  166 taatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgtt 253  Q
    ||||||||  ||||||||||||||||  |||||||||| |||||| ||| ||||||| | | || ||||||| ||| ||||| ||||||    
T  45679793 taatgtataaaaattttaaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaatattttattaaaattgtt 45679705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 47944603 - 47944560
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  47944603 aatgtattgaaattttaaaatagtctttgattgtgcacttcgtt 47944560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 14984405 - 14984544
Alignment:
Q  113 gataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttg 212  Q
    ||||||| |||||||||| || ||||||||||  || ||| || ||||||  | ||| ||| ||||||| |||||| |   ||||||||||||||||| |    
T  14984405 gataatagtcattttggtcct-gaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttag 14984503  T
Q  213 tc-aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    || ||||||||| ||| |||||||| |||| ||||||||||    
T  14984504 tcaaaatagttcctgacattaaaatatttcgttaatattgt 14984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 23195786 - 23195690
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttg-tcaaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||| |||||||| ||||||||||||| ||| |||||||||| ||| || | |||||||||  |||| |||||| | |||| ||||||||||    
T  23195786 atagtctttcaatgtattaaaattttaaaataatttctgattgtgcatttcattagttcaaatagtctatgacattaaagtatttcgttaatattgt 23195690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 45681451 - 45681387
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaatagt 221  Q
    ||||||||| ||||||||||||||||||||||||  |||||| ||||||| | | ||||||||||    
T  45681451 atagtctttaaatgtattgaaattttaaaatagtccttgattatgcactttgctagtcaaatagt 45681387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 47944335 - 47944385
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||| ||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaa 47944385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 32536464 - 32536509
Alignment:
Q  165 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||    
T  32536464 ttaatgtattgaaattctaaaataatttttgattgtgcatttcgtt 32536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 7672334 - 7672410
Alignment:
Q  112 agataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaata 188  Q
    |||||||| |||||||||| || |||||||||||||  ||| |  ||| |||||||||||||| ||||| |||||||    
T  7672334 agataatagtcattttggtccttgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaata 7672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 30843910 - 30843819
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    ||||| ||| ||||||||  ||||||||||| || ||| || ||||||| |||||||||  |||||  |||||||| | |||||||||||||    
T  30843910 taatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactt 30843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 39336839 - 39336789
Alignment:
Q  165 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtca 215  Q
    ||||| |||| |||||||||||||||||||||||| | |||||||| ||||    
T  39336839 ttaatatattaaaattttaaaatagtttttgattgcggacttcgttagtca 39336789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 20936523 - 20936486
Alignment:
Q  215 aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  20936523 aaatagtttctgatattaaaatgtttcattaatattgt 20936486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 29079272 - 29079235
Alignment:
Q  215 aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  29079272 aaatagttcctaatattaaaatgtttcattaatattgt 29079235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 52330675 - 52330622
Alignment:
Q  164 tttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||||||||||||||||||| ||  ||| ||||| ||||| ||||||    
T  52330675 tttaatgtattgaaattttaaaatagtcttaaattatgcacctcgttggtcaaa 52330622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 22235539 - 22235487
Alignment:
Q  165 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||| ||||||| |||||| |||||||||||||| || ||| ||||||    
T  22235539 ttaatgtatcgaaatttcaaaataatttttgattgtgcaatttgttagtcaaa 22235487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 252
Target Start/End: Original strand, 40124264 - 40124402
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc 214  Q
    ||||| ||| |||||| || ||||||||||  || ||| || ||||||  ||||||||| ||||||||||||| || | |||||||||||| |||| |||    
T  40124264 taatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtc 40124363  T
Q  215 -aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
     ||||||| ||| | |||||| |  ||||||||||||||    
T  40124364 aaaatagtccataacattaaagtacttcattaatattgt 40124402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 12676427 - 12676519
Alignment:
Q  161 tcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||||||| ||||| |||||||||| | ||||||||||||| ||| ||| ||||| ||  |||  ||||||||||| |||||||||||    
T  12676427 tcttttaatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgt 12676519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 19206566 - 19206506
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||| ||||||||||  ||||||||||||||||| ||||| ||||||| ||| ||||||    
T  19206566 atagtcctttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaa 19206506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 6686797 - 6686836
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcacttcgtttgtca 215  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6686797 aaattttaaaatagtttttgattgtgcactttgttagtca 6686836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 6788550 - 6788492
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtca 215  Q
    |||||| || |||||||  ||||||||||||||||| ||||||||||||| ||| ||||    
T  6788550 atagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtca 6788492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 7165831 - 7165761
Alignment:
Q  136 aatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    |||||||||  || ||| || ||||||||| |||||||| ||||||||||||||| | ||||| |||||||    
T  7165831 aatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactt 7165761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 20966261 - 20966220
Alignment:
Q  176 aaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||    
T  20966261 aaattttaaaatagtctttgattgtgcactttgttagtcaaa 20966220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 1517582 - 1517626
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtg 201  Q
    |||||| || ||||||| |||||||||||||||| ||||||||||    
T  1517582 atagtccttcaatgtatcgaaattttaaaatagtctttgattgtg 1517626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 18858011 - 18858055
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtg 201  Q
    ||||||||||||| ||| ||||||||||||||| || ||||||||    
T  18858011 atagtcttttaatatatcgaaattttaaaatagattatgattgtg 18858055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 18903233 - 18903185
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    |||||| || ||||||| |||||| ||||||||||| ||||||||||||    
T  18903233 atagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcact 18903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 29488709 - 29488745
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgca 203  Q
    |||||||  ||||||||||||||||||||||||||||    
T  29488709 aatgtatcaaaattttaaaatagtttttgattgtgca 29488745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 9307517 - 9307432
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaatagttcatgatattaaaatgtttcattaatattgt 252  Q
    ||||||||||||||||||||||||   ||| |||||| ||| ||||||||||||| | ||| ||||||||  |||||||| |||||    
T  9307517 aatgtattgaaattttaaaatagtccctgaatgtgcatttcatttgtcaaatagtccctgacattaaaataattcattaacattgt 9307432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 9307250 - 9307325
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 210  Q
    |||||||||||||  |||||  ||||||| | |||||||  ||||||||||||||||||| ||| |||||||||||    
T  9307250 gaatgtgtaataaatagtgataatagtctctaaatgtatcaaaattttaaaatagttttttattatgcacttcgtt 9307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 31315343 - 31315298
Alignment:
Q  160 gtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||    
T  31315343 gtctcttaatgtattaaaattttaaaatagtctttgattgtgcact 31315298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 25085141 - 25085089
Alignment:
Q  165 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||  ||||||||||||| ||||||||||||||||| ||| ||||||    
T  25085141 ttaatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaa 25085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 9762668 - 9762629
Alignment:
Q  166 taatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  9762668 taatgtatcaaaattttaaaatagtttttgattgtgcact 9762629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 4964351 - 4964258
Alignment:
Q  158 tagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatatt 250  Q
    ||||| || |||||||| |||||||||||||||   | ||| |||||||  || |||||| |||||  ||||||||||||| ||||||||||||    
T  4964351 tagtccttcaatgtattaaaattttaaaatagtcaataattatgcactttattagtcaaaatagtttttgatattaaaatgcttcattaatatt 4964258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 30000038 - 30000001
Alignment:
Q  163 ttttaatgtattgaaattttaaaatagtttttgattgt 200  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  30000038 ttttaaggtattaaaattttaaaatagtttttgattgt 30000001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 31803956 - 31804009
Alignment:
Q  164 tttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||  ||||||||||||| ||||||||||| || |||||| ||||||    
T  31803956 tttaatgtatcaaaattttaaaataatttttgattgttcatttcgttagtcaaa 31804009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 28995595 - 28995539
Alignment:
Q  161 tcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||| ||||||||||||||||||| | ||||||| |  |||||||| ||||||    
T  28995595 tcttttaacgtattgaaattttaaaataatatttgattatttacttcgttagtcaaa 28995539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 81349 - 81397
Alignment:
Q  169 tgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  81349 tgtattgaaatttcaaaatagtttatgattgtgcacttcgttagtcaaa 81397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 23159081 - 23159165
Alignment:
Q  167 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgt-caaatagttcatgatattaaaatgtttcattaatatt 250  Q
    |||||||  ||||||||||||||| |||||||||||| |||||| ||  ||||||| | |||| || ||||||||||||||||||    
T  23159081 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatatt 23159165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 42932827 - 42932887
Alignment:
Q  157 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||| ||||| |||||||||    
T  42932827 atagttttttaatgtatcgaaattttaaaatagtttctcattgtgtacttcatttgtcaaa 42932887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 296591 - 296546
Alignment:
Q  161 tcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 206  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||    
T  296591 tcttttaatgcattgaaattttaaaataagttttgattgtgcactt 296546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 3599845 - 3599881
Alignment:
Q  165 ttaatgtattgaaattttaaaatagtttttgattgtg 201  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3599845 ttaatgtattgaaattttaaaatagtgtttgattgtg 3599881  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 13200891 - 13200852
Alignment:
Q  164 tttaatgtattgaaattttaaaatagtttttgattgtgca 203  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13200891 tttaatgtagtgaaattttaaaatattttttgattgtgca 13200852  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 8206379 - 8206297
Alignment:
Q  135 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||||||| ||| |  |||||| |||||||||| ||||||||| ||||||   ||| |||||||||| || ||||||    
T  8206379 gaatgtgtaataagtagtcatgatagtcctttaatgtatcgaaattttataatagtccctgaatgtgcacttcattagtcaaa 8206297  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 37269159 - 37269117
Alignment:
Q  158 tagtcttttaatgtattgaaattttaaaatagtttttgattgt 200  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||    
T  37269159 tagtttttaaatgtattgaaatttaaaaatagtttttgattgt 37269117  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 9577097 - 9577129
Alignment:
Q  158 tagtcttttaatgtattgaaattttaaaatagt 190  Q
    |||||||||||||||| ||||||||||||||||    
T  9577097 tagtcttttaatgtatcgaaattttaaaatagt 9577129  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 14461822 - 14461750
Alignment:
Q  171 tattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttca 242  Q
    |||| ||||||||||||||| | ||||||| ||||||||| ||| ||||||| |  |||||||||||| ||||    
T  14461822 tattcaaattttaaaatagtctctgattgtacacttcgttagtcaaaatagtccccgatattaaaatgcttca 14461750  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 19342566 - 19342534
Alignment:
Q  171 tattgaaattttaaaatagtttttgattgtgca 203  Q
    |||| ||||||||||||||||||||||||||||    
T  19342566 tattaaaattttaaaatagtttttgattgtgca 19342534  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 26675375 - 26675287
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgca 203  Q
    ||||| ||| ||||||||| ||||||||||| |  | | || ||| |||||||||||||  | ||| ||||||||| ||||||||||||    
T  26675375 taatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgca 26675287  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 26946983 - 26946895
Alignment:
Q  115 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgca 203  Q
    ||||| ||| ||||||||| ||||||||||| |  | | || ||| |||||||||||||  | ||| ||||||||| ||||||||||||    
T  26946983 taatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgca 26946895  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 27001482 - 27001402
Alignment:
Q  125 tttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 205  Q
    ||||||||| ||||||||||| || ||| || ||||||| |  || |||  ||||||||||||||| | ||||||||||||    
T  27001482 tttggttcttgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctgattgtgcact 27001402  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 42525231 - 42525287
Alignment:
Q  161 tcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 217  Q
    |||||||||||||   |||||||||||| |||||||||||| ||||| || ||||||    
T  42525231 tcttttaatgtatcataattttaaaataatttttgattgtggacttcattagtcaaa 42525287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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