View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0450_low_13 (Length: 251)
Name: NF0450_low_13
Description: NF0450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0450_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 40280020 - 40279891
Alignment:
| Q |
25 |
agaggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
124 |
Q |
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| T |
40280020 |
agaggaaagaaggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
40279921 |
T |
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| Q |
125 |
ccattgatgacaaagaagagaaatataaat |
154 |
Q |
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| T |
40279920 |
ccattgatgacaaagaagagaaatataaat |
40279891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 40458330 - 40458459
Alignment:
| Q |
25 |
agaggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
124 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458330 |
agaggaaagaaggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
40458429 |
T |
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| Q |
125 |
ccattgatgacaaagaagagaaatataaat |
154 |
Q |
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| T |
40458430 |
ccattgatgacaaagaagagaaatataaat |
40458459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 40284981 - 40284859
Alignment:
| Q |
25 |
agaggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
124 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||||||||| |
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| T |
40284981 |
agaggaaagaaggaatgagatgtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcat |
40284882 |
T |
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| Q |
125 |
ccattgatgacaaagaagagaaa |
147 |
Q |
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| T |
40284881 |
ccattgatgacaaagaagagaaa |
40284859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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