View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0450_low_2 (Length: 400)
Name: NF0450_low_2
Description: NF0450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0450_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 16003530 - 16003693
Alignment:
| Q |
9 |
gcagagaggcaggttgcgcacccttttattagaaggggacgcggcggcgagtgtaggattggggaggggtcgtcgtcccagacgcgtccgtcatagataa |
108 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003530 |
gcagagaggcaggttgcgcacccttttattaggaagggacgcggcggcgagtgtaggattggggaggggtcgtcgtcccagacgcgtccgtcatagatag |
16003629 |
T |
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| Q |
109 |
tggaccctacacaacatcatcatgaggaggaaagcaattttcatttttcattgtttgggttccc |
172 |
Q |
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| T |
16003630 |
tggaccctacacaacatcatcatgaggaggaaagcaattttcatttttcattgtttgggttccc |
16003693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 235 - 381
Target Start/End: Original strand, 16003756 - 16003902
Alignment:
| Q |
235 |
caaatatactgtttaatcactgttgcaaaatagaagcacaagtctaaagagggtcaattgaataaactatactattatgagataaagcagtgtgatcttc |
334 |
Q |
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| T |
16003756 |
caaatatactgtttaatcactgttgtaaaatagaagcacgggtctaaagagggtcaattgaataaactatactattatgagataaagcagtgtgatcttc |
16003855 |
T |
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| Q |
335 |
ttttgattagaaaaatgaatgccaaagcacctttaaagactgatgat |
381 |
Q |
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| T |
16003856 |
ttttgattagaaaaatgaatgccaaagcacctttaaagaccgatgat |
16003902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 15984939 - 15984876
Alignment:
| Q |
307 |
tattatgagataaagcagtgtgatcttcttttgattagaaaaatgaatgccaaagcacctttaa |
370 |
Q |
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| T |
15984939 |
tattatggcataaagtagtgcggtcttcttttgattagaaaaataaatgccaaagctcctttaa |
15984876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 19151744 - 19151684
Alignment:
| Q |
307 |
tattatgagataaagcagtgtgatcttcttttgattagaaaaatgaatgccaaagcacctttaa |
370 |
Q |
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| T |
19151744 |
tattatggcataaagcagtgt---cttcttttgattagaaaaatgaatgctaaagctcctttaa |
19151684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 15966174 - 15966134
Alignment:
| Q |
330 |
tcttcttttgattagaaaaatgaatgccaaagcacctttaa |
370 |
Q |
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| T |
15966174 |
tcttcttttgattagaaaaatgaacgccaaagctcctttaa |
15966134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 6798431 - 6798373
Alignment:
| Q |
72 |
gaggggtcgtcgtcccagacgcgtccgtcatagataatggaccctacacaacatcatca |
130 |
Q |
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| T |
6798431 |
gaggggtcgtcgtcccagacgggtccatccctgatagtggacgctacacaacatcatca |
6798373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 19127071 - 19127117
Alignment:
| Q |
316 |
ataaagcagtgtgatcttcttttgattagaaaaatgaatgccaaagc |
362 |
Q |
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| T |
19127071 |
ataaagcagtttggtattcttttgattagaaaaatgaatgacaaagc |
19127117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 393233 - 393179
Alignment:
| Q |
67 |
ttggggaggggtcgtcgtcccagacgcgtccgtcatagataatggaccctacaca |
121 |
Q |
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| T |
393233 |
ttggggaggggtcgtcgtcctagacggatccgtcctagatagtggaccctacaca |
393179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 31010762 - 31010695
Alignment:
| Q |
61 |
gtaggattggggaggggtcgtcgtcccagacgcgtccgtcatagataatggaccctacacaacatcat |
128 |
Q |
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| T |
31010762 |
gtaggagttgggagggttcgtcatcccagacgggtctgtcttaggtagtggaccctacacaacatcat |
31010695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 49439356 - 49439300
Alignment:
| Q |
69 |
ggggaggggtcgtcgtcccagacgcgtccgtcatagataatggaccctacacaacat |
125 |
Q |
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| T |
49439356 |
ggggaggggtcgtcgtcccagacgggtccgttccagatagtggaccatgcacaacat |
49439300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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