View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0450_low_5 (Length: 352)
Name: NF0450_low_5
Description: NF0450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0450_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 46429388 - 46429665
Alignment:
| Q |
4 |
aacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagatgttatacctcccaatctct-aagtccctcatgcaataccgccagaa |
102 |
Q |
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| T |
46429388 |
aacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagacgttatacctcccaatctcttaagtccctcatgcaataccgccagaa |
46429487 |
T |
|
| Q |
103 |
tcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagga |
202 |
Q |
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| T |
46429488 |
tcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagga |
46429587 |
T |
|
| Q |
203 |
catgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaaca |
280 |
Q |
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| T |
46429588 |
catgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaaca |
46429665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 46426146 - 46426204
Alignment:
| Q |
223 |
cattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacaa |
281 |
Q |
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||||| ||| |||||||||||||||| || ||||||||||||| |||| |||||||||| |
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| T |
46426146 |
cattcatcagaaatgtcaagaagtaagtcaggtaaatagtaaatttaacacttcaacaa |
46426204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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