View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0450_low_9 (Length: 274)
Name: NF0450_low_9
Description: NF0450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0450_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 30291008 - 30290814
Alignment:
| Q |
52 |
tcatcaatgtatctgtatatactataaatattatggtgcaaaaaaccggacgaagctaaaaagtaggaaaaacagaagaggggaaaagtgagaagaggag |
151 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291008 |
tcatcaatgtatctgtatatactatacatattatggtgcaaaacaccggatgaagctaaaaagtaggaaaaacagaagaggggaaaagtgagaagaggag |
30290909 |
T |
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| Q |
152 |
gataaatgtgtaactcacatgtcatctccaaggatgcctcccttattattcttgtacaaatcatacagaaactacactcccactctctgctgctc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
30290908 |
gataaatgtgtaactcacatgtcatctccaaggatgcctcccttattattcttgtacaaatcatacagaaacttcactcccactctctgatgctc |
30290814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 30319908 - 30319714
Alignment:
| Q |
52 |
tcatcaatgtatctgtatatactataaatattatggtgcaaaaaaccggacgaagctaaaaagtaggaaaaacagaagaggggaaaagtgagaagaggag |
151 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30319908 |
tcatcaatgtatctgtatatactatacatattatggtgcaaaacaccggatgaagctaaaaagtaggaaaaacagaagaggggaaaagtgagaagaggag |
30319809 |
T |
|
| Q |
152 |
gataaatgtgtaactcacatgtcatctccaaggatgcctcccttattattcttgtacaaatcatacagaaactacactcccactctctgctgctc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
30319808 |
gataaatgtgtaactcacatgtcatctccaaggatgcctcccttattattcttgtacaaatcatacagaaacttcactcccactctctgatgctc |
30319714 |
T |
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