View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451Ase18 (Length: 558)
Name: NF0451Ase18
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451Ase18 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 552
Target Start/End: Original strand, 2759168 - 2759698
Alignment:
| Q |
9 |
tactaacctcaattttatcagtagtagtaataatggaggtgctaatagtattattgtttatggaataagttgggatatcaaaggaaggattagtatgagt |
108 |
Q |
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| T |
2759168 |
tactaacctcaattttttcagtagtagtaataatggaggtgctaacagtattattgtttatggaataagttgggatatcaaaggaaggattagtatgagt |
2759267 |
T |
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| Q |
109 |
ggctgcagaaacacaatagaagttatcattgagctttcttgtagaaaaacanacatgaatgatgtttcctgttataattgtggagaaagaagaccacatg |
208 |
Q |
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| T |
2759268 |
ggctgcagaaacacaatagaagttatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataattgtggagaaagaagaccaaatg |
2759367 |
T |
|
| Q |
209 |
tatataaggattaaaagaaagattaaagcagaaattctacgtatgaagctgtatagaattgtgaaggcaaaacaagattgtttgggttctaattttcttg |
308 |
Q |
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| T |
2759368 |
tatataaggattaaaagaaagattaaagcagaaattctacgtatgaagctgtatagaattgtgaaggcaaaacaagattgtttgggttctaattttcttg |
2759467 |
T |
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| Q |
309 |
aaaatttggaccgttttttggataaagacactgccatttttgtgatgagaataatgttaggaattaggataccttgtggtttttctagtagagaaaaaat |
408 |
Q |
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| T |
2759468 |
aaaatttggaccgttttttggataaagacactgccattattgtgatgagaataatgttaggaattaggataccttgtggtttttctagtagagaaaaaat |
2759567 |
T |
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| Q |
409 |
tatgcattattttatcaccaatacttatcatgcaagcacgaattagatgattaaataataacgtgtgcacgtcgtggtttagatatatagtttatcgtac |
508 |
Q |
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| T |
2759568 |
tatgcattattttgtcaccaatacttatcatgcaagcacgaattagatgattaaataataacgtgtgcacgtcgtg-------------gtttatcgtac |
2759654 |
T |
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| Q |
509 |
gaacgtgcttactaatatagtggttgaggttcatgatccaatta |
552 |
Q |
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| T |
2759655 |
gaacgtgcttactaatatagtggttgaggttcatgatccaatta |
2759698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 2755230 - 2755446
Alignment:
| Q |
32 |
gtagtaataatggaggtgctaatagtattattgtttatggaataagttgggatatcaaaggaaggattagtatgagtggctgcagaaacacaatagaagt |
131 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||| || ||||| |||||| ||| |
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| T |
2755230 |
gtagtaattatagaggtgctaatagtattattgtttatggaataatttgagatttcaaaggaagtattagtatgagtgggtgaagaaagacaataaaagc |
2755329 |
T |
|
| Q |
132 |
tatcattgagctttcttgtagaaaaacanacatgaatgatgtttcctgttataattgtggagaaagaagaccacatgtatataaggattaaaagaaagat |
231 |
Q |
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| T |
2755330 |
tattactgaactttcttgtagaacaacaaacatgaatggtgttgactgttataatagtggataaagaagaccacatgtagattaggaataaaagaaagat |
2755429 |
T |
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| Q |
232 |
taaagcagaaattctac |
248 |
Q |
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|||||| |||||||||| |
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| T |
2755430 |
taaagccgaaattctac |
2755446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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