View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451Ase28 (Length: 685)
Name: NF0451Ase28
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451Ase28 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 190 - 672
Target Start/End: Original strand, 18044976 - 18045453
Alignment:
| Q |
190 |
gtgtaaattatctaacgtttaacaatttcaaagatagttttacnnnnnnnnncaaatttcggagg-atatttacaaaattttacaacttcaaagaagtac |
288 |
Q |
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| T |
18044976 |
gtgtaaattgtccgacgtttaacaattttaaggatagttttaccttttttttcaaatttcggagggatatttacaaaattttacaacttcaaagaagtac |
18045075 |
T |
|
| Q |
289 |
tcaaaaatcaatttaggcatacaaatacatcacatgcgaaagcgtccctcaagttgacttccttccac--gcaacagcaccaaacttccatgtcttaaag |
386 |
Q |
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| T |
18045076 |
tcaaaaatcaatttaggcatgcaaatacatcacatgcgaaagcgtccctcaagttgacttccctccacacgcaacagcaccaaacttccatgtcttaaag |
18045175 |
T |
|
| Q |
387 |
ctcaagtaatcaagttgaacttgatcactttacgtcttcagcatgatcaacattgcaacaaattaagccccaaaactaaanggtttaaatcctcttcaca |
486 |
Q |
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| T |
18045176 |
--------atcaagttgaactagatcactttacgtcttcagcatggtcaacattgcaacaaattaagccccaaaactaaatggtttaaatcctcttcaca |
18045267 |
T |
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| Q |
487 |
tgaaagctattttataagtgtatctcttttcacatgaaagaatctattaaatgaagaggatcgtgaccctaaactaacatatcataactccttccgttgc |
586 |
Q |
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| T |
18045268 |
tgaaagctattttataagtgtatctcttttcgcatgaaagaatctattaaatgaagaggatcgtgaccctaaactaacatatcataactccttccgttgc |
18045367 |
T |
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| Q |
587 |
ttactacatgtgattggtaatcccaaaacgttcttctctcaatatataaatgaaagctgccacccttggcacgtttatggtanaaa |
672 |
Q |
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| T |
18045368 |
ttactacatgtgattggtaatcccaaaacgttcttctctcaatatataaatgaaagctgccacccttgtcacgtttattgtagaaa |
18045453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 18044722 - 18044804
Alignment:
| Q |
8 |
cctttttagagcaatttttcttgtatgaattgttttcaaagggtgcgattcgtttggttattattatcaatttcaggggcatgtat |
93 |
Q |
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| T |
18044722 |
cctttttagagcaatttttcttgtatgaattgttttcaaatagtacgattcgtttgg---ttattatcaatttcaggggcatgtat |
18044804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 452
Target Start/End: Original strand, 18049917 - 18049960
Alignment:
| Q |
409 |
gatcactttacgtcttcagcatgatcaacattgcaacaaattaa |
452 |
Q |
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| T |
18049917 |
gatcactttacgtcttcaacattgtcaacattgcaacaaattaa |
18049960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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