View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Ase3 (Length: 314)

Name: NF0451Ase3
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Ase3
NF0451Ase3
[»] chr4 (1 HSPs)
chr4 (8-308)||(24487663-24487962)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 24487663 - 24487962
Alignment:
Q  8 gttgattgtggtcggtttaatttataagaaaaaattgcgtaataatctcaactaacatataaattgtccttaatcatatatcataattagtttnnnnnnn 107  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||            
T  24487663 gttgattgtggtcggtttaatttataaggaaaaattgcataataatctcaactaacatataaattgtctttaatcatatgtcataattagtt--aaaaaa 24487760  T
Q  108 nttaaatcgaatcataatccagaagatcctccatcaataatggagcaaatccaggagcttgaggagaactcaatgttcatattgttgaacggattgtgga 207  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||    
T  24487761 attaaatcgaatcataatccagaagatcctccatcaattatggagcaaatctaggagtttaaggagaactcaatgttcatattgttgaatggattgtgga 24487860  T
Q  208 gatgagcccattgttgagaccaactgcttaaataa-tttttagtgggtttcaaattgttttgagaaagatgaagcattgttaaatcaaaattgtaggaat 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24487861 gatgagcccattgttgagaccaactgcttaaataattttttagtgggtttcaaattgtttcgagaaagatgaagcattgttaaatcaaaattgtaggaat 24487960  T

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