View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Eco1 (Length: 989)

Name: NF0451Eco1
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Eco1
NF0451Eco1
[»] chr4 (3 HSPs)
chr4 (11-464)||(25226529-25226972)
chr4 (544-650)||(25226353-25226459)
chr4 (14-207)||(5237725-5237918)
[»] chr3 (4 HSPs)
chr3 (645-880)||(24733642-24733874)
chr3 (60-178)||(19588456-19588574)
chr3 (60-178)||(12283717-12283835)
chr3 (59-175)||(17482441-17482558)
[»] chr1 (4 HSPs)
chr1 (14-370)||(30757673-30758025)
chr1 (14-370)||(30765125-30765477)
chr1 (60-178)||(52776097-52776215)
chr1 (14-175)||(2358147-2358308)
[»] chr6 (2 HSPs)
chr6 (51-136)||(20700958-20701043)
chr6 (14-207)||(14813183-14813376)
[»] chr5 (2 HSPs)
chr5 (218-286)||(15447045-15447113)
chr5 (12-133)||(9280383-9280504)
[»] chr2 (2 HSPs)
chr2 (74-178)||(29497874-29497978)
chr2 (218-280)||(34893409-34893471)
[»] chr7 (1 HSPs)
chr7 (12-126)||(14580184-14580297)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 464
Target Start/End: Complemental strand, 25226972 - 25226529
Alignment:
Q  11 ggaagaacgcaaatttgcaatt-ctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagt 109  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  25226972 ggaagaacgcatatttgcaatttctaaggcgatcaatcttagagaagcgctctttcaaatcctcccaaacatcaaaggcgtaatcatgaaatactatagt 25226873  T
Q  110 ctgagcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttcccaagcaagacggttgagatcatcttcatcaggcaca 209  Q
    |||||||||| |||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  25226872 ctgagcaattaaatcagtaacagaattgataatccaagagtgtaccaaatggttacagcgttcccaagcatgacggttgagatcatcttcatcaggcaca 25226773  T
Q  210 ggtaagcttccactgatgaagggaagcttgttcttagctcccaaagcacgctgcattgatctgctccatgcaagatagttggagccattgaacttaggag 309  Q
     ||||| ||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||| ||||||    
T  25226772 tgtaagtttccattgatgaagggaagcttgtttttagctcccaaagcacgctacattgatccgctccatgtaagatagttggagccgttgaacataggag 25226673  T
Q  310 acacaatcaccgagttaattaggtccttcactagaatgaacatagaaagcagaatcagtattacgttattgtttattgttgttgattcgaattgtgaacc 409  Q
    ||||||||||||||    |||||||||||||||| ||||||||||||||||||||||||| |  |   ||||||    |||||||||||||||| |||||    
T  25226672 acacaatcaccgag----ttaggtccttcactaggatgaacatagaaagcagaatcagtactcgg---ttgttt----ttgttgattcgaattgcgaacc 25226584  T
Q  410 atgatgctagaaatcagaggaagaagatgaagatcttcaaatcaagaaacgcaaa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25226583 atgatgctagaaatcagaggaagaagatgaagatcttcaaatcaagaaacgcaaa 25226529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 544 - 650
Target Start/End: Complemental strand, 25226459 - 25226353
Alignment:
Q  544 ggaatcttcaagaaaacacgggaaaaacgaaaactggaaaagcttgaagaacaagcataaattgcggaaacggttatggatcgtaactaactttctcatg 643  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||  | |||||  ||||||||||||||||||| |||||||    
T  25226459 ggaatcttcaagaaaacaacggaaaaacgaaaactggaaaagcttgaagaacaagcatcaatgacagaaacaattatggatcgtaactaactctctcatg 25226360  T
Q  644 agagaga 650  Q
    |||||||    
T  25226359 agagaga 25226353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 5237918 - 5237725
Alignment:
Q  14 agaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctga 113  Q
    |||||| ||||||||||| | ||  |||||||| || ||||| || |||||||||||   |||||| ||||  ||| |||||  ||| || ||||| |||    
T  5237918 agaacgtaaatttgcaatgcgaatacgatcaattttggagaatcgttctttcaaatcaagccaaacctcaagtgcagaatcacaaaaaacaatagtttga 5237819  T
Q  114 gcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttcccaagcaagacggttgagatcatcttcatcaggca 207  Q
    ||||| || |||| |||||| |||  || |||||| || |||||||| || ||||||||||| ||    ||||| | |||||||||||||||||    
T  5237818 gcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgctgtgcggttcaaatcatcttcatcaggca 5237725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 645 - 880
Target Start/End: Complemental strand, 24733874 - 24733642
Alignment:
Q  645 gagagaaagcaaaataaaactgataccatattatgaataacagaaatagaatcatattattgatgaaagaattaaggagtacaggcaactgatgctatac 744  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||    
T  24733874 gagagaaagcaaaataaaactgataccatattatgaataacagaaatagaatcatattattgatgaaagaa----ggagtacatgcaactgatgctatac 24733779  T
Q  745 aatagaaatggtagactagcaatagcatatcatatcatggctaagacttaatctaaactgagttacttgggagtctaagctatctaaatcactattgnta 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  24733778 aatagaaatggtagactagcaatagcatatcatatcatggctaagacttaatctaaactgagttactt-ggagtctaagctatctaaatcactattgtta 24733680  T
Q  845 tgtaatactatt-aaccacaaattaggaa-aaacgtaa 880  Q
    |||||||||||| ||| |||||||||||| ||||||||    
T  24733679 tgtaatactattaaacaacaaattaggaagaaacgtaa 24733642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 19588456 - 19588574
Alignment:
Q  60 tctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctgagcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaat 159  Q
    |||| |||||| | |||||| ||||| |||  |||||  || || ||||| |||||||||||||||| ||| |||||   || |||||| ||||||||||    
T  19588456 tcttgcaaatcatgccaaacttcaaaagcagtatcatagaatacgatagtttgagcaattgaatcagaaacggaattaataagccaagattgtaccaaat 19588555  T
Q  160 ggttgcagcgttcccaagc 178  Q
    ||||||| |||||||||||    
T  19588556 ggttgcatcgttcccaagc 19588574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 12283835 - 12283717
Alignment:
Q  60 tctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctgagcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaat 159  Q
    |||| |||||| | |||||| ||||| |||  |||||  || || ||||| |||||||||||||||  ||| |||||    | |||||| ||||||||||    
T  12283835 tcttgcaaatcatgccaaacttcaaaagcagtatcatagaatacgatagtttgagcaattgaatcaaaaactgaattaatgagccaagattgtaccaaat 12283736  T
Q  160 ggttgcagcgttcccaagc 178  Q
    ||||||| |||||||||||    
T  12283735 ggttgcatcgttcccaagc 12283717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 17482441 - 17482558
Alignment:
Q  59 ctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctgagcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaa 158  Q
    |||||||| |||||||||||||||  | |||||||||||||| || || || ||||| || || || | ||| ||||||  ||||||||| |||| |||     
T  17482441 ctctttcagatcttcccaaacatctgaagcataatcatgaaagacaatggtttgagctatagattccgaaaccgaattgataatccaagagtgtatcaag 17482540  T
Q  159 tgg-ttgcagcgttccca 175  Q
    ||| ||||| ||||||||    
T  17482541 tggtttgcaccgttccca 17482558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 4e-87; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 30757673 - 30758025
Alignment:
Q  14 agaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctga 113  Q
    |||||||||||| ||||||||||  |||||||||||||| || || || |||||||| ||||||| |||||| |||| ||||||||||| |||||| |||    
T  30757673 agaacgcaaattggcaattctaatacgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttga 30757772  T
Q  114 gcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttcccaagcaagacggttgagatcatcttcatcaggcacaggta 213  Q
    | ||||||||||| |||||||||   ||||||||| | ||||||||| ||||| | |||| |||||  ||| ||||| ||||| | |||||| |||||||    
T  30757773 gaaattgaatcagaaacagaattaataatccaagactataccaaatgattgcatctttccgaagcattacgattgaggtcatcatgatcaggtacaggta 30757872  T
Q  214 agcttccactgatgaagggaagcttgttcttagctcccaaagcacgctgcattgatctgctccatgcaagatagttggagccattgaacttaggagacac 313  Q
       ||||| |||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  30757873 gagttccattgataaagggaagcttgttcttaacacccaaagcacgctgcattgatctactccatgcaagataattggatccattgaacttaggagacac 30757972  T
Q  314 aatcaccgagttaattaggtccttcactagaatgaacatagaaagcagaatcagtat 370  Q
    ||||||||    |||||||||||||||||  ||||||| ||||||||||||||||||    
T  30757973 aatcaccg----aattaggtccttcactatgatgaacaaagaaagcagaatcagtat 30758025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 30765125 - 30765477
Alignment:
Q  14 agaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctga 113  Q
    |||||||||||| ||||||||||  |||||||||||||| || || || |||||||| ||||||| |||||| |||| ||||||||||| |||||| |||    
T  30765125 agaacgcaaattggcaattctaatacgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttga 30765224  T
Q  114 gcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttcccaagcaagacggttgagatcatcttcatcaggcacaggta 213  Q
    | ||||||||||| |||||||||   ||||||||| | ||||||||| ||||| | |||| |||||  ||| ||||| ||||| | |||||| |||||||    
T  30765225 gaaattgaatcagaaacagaattaataatccaagactataccaaatgattgcatctttccgaagcattacgattgaggtcatcatgatcaggtacaggta 30765324  T
Q  214 agcttccactgatgaagggaagcttgttcttagctcccaaagcacgctgcattgatctgctccatgcaagatagttggagccattgaacttaggagacac 313  Q
       ||||| |||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  30765325 gagttccattgataaagggaagcttgttcttaacacccaaagcacgctgcattgatctactccatgcaagataattggatccattgaacttaggagacac 30765424  T
Q  314 aatcaccgagttaattaggtccttcactagaatgaacatagaaagcagaatcagtat 370  Q
    ||||||||    |||||||||||||||||  ||||||| ||||||||||||||||||    
T  30765425 aatcaccg----aattaggtccttcactatgatgaacaaagaaagcagaatcagtat 30765477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 52776215 - 52776097
Alignment:
Q  60 tctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctgagcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaat 159  Q
    |||| |||||| | |||||| ||||| |||  |||||  || || ||||| |||||||||||||||| ||| |||||    | |||||| ||||||||||    
T  52776215 tcttgcaaatcatgccaaacttcaaaagcagtatcatagaatacgatagtttgagcaattgaatcagaaactgaattaatgagccaagattgtaccaaat 52776116  T
Q  160 ggttgcagcgttcccaagc 178  Q
    ||||||| |||||||||||    
T  52776115 ggttgcatcgttcccaagc 52776097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 2358308 - 2358147
Alignment:
Q  14 agaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctga 113  Q
    |||||| ||||||||||| | ||  |||||||| || ||||| || |||||||||||   |||||| ||||  ||| |||||  ||| || ||||| |||    
T  2358308 agaacgtaaatttgcaatgcgaatacgatcaattttggagaatcgttctttcaaatcaagccaaacctcaagtgcagaatcacaaaaaacaatagtttga 2358209  T
Q  114 gcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttccca 175  Q
    ||||| || |||| |||||| |||  || |||||| || |||||||| || |||||||||||    
T  2358208 gcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttccca 2358147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 20700958 - 20701043
Alignment:
Q  51 gagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctgagcaattgaatcagtaacagaatt 136  Q
    |||||||| ||||| | ||| ||||||||||||||  ||| ||||||||| |||||||||||||||||||||| || ||| |||||    
T  20700958 gagaagcgttctttgagatcctcccaaacatcaaaatcattatcatgaaaaactatagtctgagcaattgaataagaaactgaatt 20701043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 14813376 - 14813183
Alignment:
Q  14 agaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtctga 113  Q
    |||||| ||||||||||| | ||  |||||||| || ||||| || |||||||||||   |||||| ||||  ||| |||||  ||| || ||||| |||    
T  14813376 agaacgtaaatttgcaatgcgaatacgatcaattttggagaatcgttctttcaaatcaagccaaacctcaagtgcagaatcacaaaaaacaatagtttga 14813277  T
Q  114 gcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttcccaagcaagacggttgagatcatcttcatcaggca 207  Q
    ||||| || |||| |||||| |||  || |||||| || |||||||| || ||||||||||| ||    ||||| | |||||||||||||||||    
T  14813276 gcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgctgtgcggttcaaatcatcttcatcaggca 14813183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 15447113 - 15447045
Alignment:
Q  218 tccactgatgaagggaagcttgttcttagctcccaaagcacgctgcattgatctgctccatgcaagata 286  Q
    |||| ||||||| ||||| || |||||||| || | |||||| ||||||||||||||||||||||||||    
T  15447113 tccattgatgaaaggaagatttttcttagcacctagagcacgttgcattgatctgctccatgcaagata 15447045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 9280504 - 9280383
Alignment:
Q  12 gaagaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtct 111  Q
    ||||| |||||||||||||| | ||  |||||||||||  |||| ||||| ||||||||   |||||| ||||  |||  ||||  |||||| ||||| |    
T  9280504 gaagagcgcaaatttgcaatacaaatacgatcaatctttaagaaacgctccttcaaatcaagccaaacttcaagtgcagtatcacaaaacacaatagttt 9280405  T
Q  112 gagcaattgaatcagtaacaga 133  Q
    | ||||||||||||| ||||||    
T  9280404 gtgcaattgaatcagaaacaga 9280383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 29497978 - 29497874
Alignment:
Q  74 ccaaacatcaaaggcataatcatgaaacactatagtctgagcaattgaatcagtaacagaattgtaaatccaagaatgtaccaaatggttgcagcgttcc 173  Q
    ||||||||||||||||  |||||  || || ||||| ||||||||  |||||| |||| ||||   || |||||| ||||||| ||||||||| ||||||    
T  29497978 ccaaacatcaaaggcagtatcatagaaaacaatagtttgagcaatgaaatcagaaacaaaattagtaagccaagattgtaccacatggttgcatcgttcc 29497879  T
Q  174 caagc 178  Q
    |||||    
T  29497878 caagc 29497874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 34893409 - 34893471
Alignment:
Q  218 tccactgatgaagggaagcttgttcttagctcccaaagcacgctgcattgatctgctccatgc 280  Q
    |||| ||||||| |||||||||||||| || || ||||| || |||||||| |||||||||||    
T  34893409 tccattgatgaaaggaagcttgttcttggcgcctaaagcgcgttgcattgacctgctccatgc 34893471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 14580297 - 14580184
Alignment:
Q  12 gaagaacgcaaatttgcaattctaaggcgatcaatcttagagaagcgctctttcaaatcttcccaaacatcaaaggcataatcatgaaacactatagtct 111  Q
    |||||||||| ||||||||||| || |||||||||||| || || || |||||||||||   |||||| ||||  |||  ||||  |||||||||||| |    
T  14580297 gaagaacgcagatttgcaattcgaatgcgatcaatctttga-aaacgttctttcaaatcaagccaaacttcaagagcagtatcacaaaacactatagttt 14580199  T
Q  112 gagcaattgaatcag 126  Q
    ||| ||| |||||||    
T  14580198 gagtaatggaatcag 14580184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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