View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Eco11 (Length: 735)

Name: NF0451Eco11
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Eco11
NF0451Eco11
[»] chr1 (10 HSPs)
chr1 (8-732)||(29718296-29719026)
chr1 (8-631)||(29690784-29691408)
chr1 (200-732)||(29658461-29658999)
chr1 (224-441)||(30827448-30827665)
chr1 (209-450)||(33160848-33161089)
chr1 (494-606)||(30827304-30827416)
chr1 (491-612)||(33160695-33160816)
chr1 (303-423)||(19468116-19468236)
chr1 (546-599)||(19468344-19468397)
chr1 (135-176)||(30827713-30827754)
[»] chr6 (19 HSPs)
chr6 (247-423)||(7993737-7993913)
chr6 (285-446)||(6602798-6602959)
chr6 (208-436)||(6403236-6403464)
chr6 (277-440)||(6596531-6596694)
chr6 (324-423)||(19632786-19632885)
chr6 (247-448)||(7131960-7132161)
chr6 (245-401)||(6432541-6432697)
chr6 (508-600)||(6594413-6594505)
chr6 (226-343)||(6395291-6395408)
chr6 (247-448)||(6594158-6594359)
chr6 (363-436)||(10579426-10579499)
chr6 (284-344)||(8913661-8913721)
chr6 (508-599)||(7993989-7994080)
chr6 (226-343)||(6399688-6399802)
chr6 (226-344)||(14821137-14821255)
chr6 (324-421)||(6410376-6410473)
chr6 (558-597)||(6589180-6589219)
chr6 (559-601)||(9411554-9411596)
chr6 (383-448)||(7119482-7119547)
[»] chr5 (3 HSPs)
chr5 (217-448)||(20477613-20477838)
chr5 (247-344)||(38267108-38267205)
chr5 (276-342)||(37938351-37938417)
[»] chr4 (7 HSPs)
chr4 (224-447)||(3438182-3438404)
chr4 (284-423)||(55908317-55908456)
chr4 (508-606)||(10634241-10634339)
chr4 (546-602)||(55908570-55908626)
chr4 (308-423)||(547284-547399)
chr4 (308-423)||(53761401-53761516)
chr4 (313-379)||(1600816-1600882)
[»] chr2 (2 HSPs)
chr2 (284-423)||(1037253-1037392)
chr2 (546-602)||(1037506-1037562)
[»] chr7 (3 HSPs)
chr7 (252-421)||(15091714-15091880)
chr7 (284-423)||(10169728-10169867)
chr7 (284-423)||(10177253-10177392)
[»] scaffold0262 (1 HSPs)
scaffold0262 (284-423)||(288-427)
[»] chr3 (1 HSPs)
chr3 (281-441)||(514314-514474)
[»] chr8 (1 HSPs)
chr8 (365-448)||(17627729-17627812)


Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Original strand, 29718296 - 29719026
Alignment:
Q  8 aaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaacattgacctctctcgcttgttcccgtgcttcttttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29718296 aaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaacattgacctctctcacttgttcccgtgcttcttttg 29718395  T
Q  108 ttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctctctcgcccttggtacaacctctctcagcctgttgaggatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718396 ttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctctctcgcccttggtacaacctctctcagcctgttgaggatca 29718495  T
Q  208 tattaatggaattagctctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttc 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718496 tattaatggaattagctctctgttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttc 29718595  T
Q  308 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcactta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29718596 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcactta 29718695  T
Q  408 gtgacatcaaaatggagtacacaactattgggaatgagagtattggaggaggaggaagggaggattctaattcttttgctgtcgtaagcccgaaagtaag 507  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29718696 gtgacatcaaaatggaatacacaactattgggaatgagagtattggaggaggaggaagggaggattctaattcttttgctgtcgtaagcccgaaagtaaa 29718795  T
Q  508 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattgg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718796 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattgg 29718895  T
Q  608 aaggaagtgtctgaa-aaactgtttct-aagttttaagatgttgtactaa-aataagcatttgaacttgtcatata-caaagttgatgat-aatcactcc 702  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  29718896 aaggaagtgtctgaagaaactgtttctaaagttttaagatgttgtactaagattaagcatttgaacttgtcatataccaacgttgatgataaatcactcc 29718995  T
Q  703 atatcatctc-accagttgctgtggcctttt 732  Q
    ||||||| || || ||||| |||||||||||    
T  29718996 atatcatatcaacgagttgttgtggcctttt 29719026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 29690784 - 29691408
Alignment:
Q  8 aaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaacattgacctctctcgcttgttcccgtgcttcttttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29690784 aaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaacattgacctctctcacttgttcccgtgcttcttttg 29690883  T
Q  108 ttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctctctcgcccttggtacaacctctctcagcctgttgaggatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690884 ttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctctctcgcccttggtacaacctctctcagcctgttgaggatca 29690983  T
Q  208 tattaatggaattagctctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttc 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690984 tattaatggaattagctctctgttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttc 29691083  T
Q  308 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcactta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29691084 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcactta 29691183  T
Q  408 gtgacatcaaaatggagtacacaactattgggaatgagagtattggaggaggaggaagggaggattctaattcttttgctgtcgtaagcccgaaagtaag 507  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29691184 gtgacatcaaaatggaatacacaactattgggaatgagagtattggaggaggaggaagggaggattctaattcttttgctgtcgtaagcccgaaagtaaa 29691283  T
Q  508 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattgg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29691284 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattgg 29691383  T
Q  608 aaggaagtgtctgaa-aaactgttt 631  Q
    ||||||||||||||| |||||||||    
T  29691384 aaggaagtgtctgaagaaactgttt 29691408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 200 - 732
Target Start/End: Original strand, 29658461 - 29658999
Alignment:
Q  200 gaggatcatattaatggaattagctctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttg 299  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  29658461 gaggatcatgttaatggaattaactctctgttatccaactctccgtatatacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttg 29658560  T
Q  300 ccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtcc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29658561 ccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtcc 29658660  T
Q  400 ttcacttagtgacatcaaaatggagtacacaactattgggaatgagagtattggaggaggaggaagggaggattctaattcttttgctgtcgtaagcccg 499  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29658661 ttcacttagtgacatcaaaatggaatacacaactattgggaatgagagtattggaggaggaggaggggaggattctaattcttttgctgtcgtaagcccg 29658760  T
Q  500 aaagtaaggtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 599  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  29658761 aaagtaaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttga 29658860  T
Q  600 gctattggaaggaagtgtctgaa-aaactgtttct-aagttttaagatgttgtactaa-aataagcatttgaacttgtcatata-caaagttgatgat-a 694  Q
    ||||||||||||| || |||||| ||||| ||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||||||||||||| |    
T  29658861 gctattggaaggacgtatctgaagaaactatttctcaagttttaaaatgttgtagtaagattaagcatttgaacttgtcatataccaaagttgatgataa 29658960  T
Q  695 atcactccatatcatctc-accagttgctgtggcctttt 732  Q
    | ||||||||||||| || || ||||| |||||||||||    
T  29658961 agcactccatatcatatcaacgagttgttgtggcctttt 29658999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 224 - 441
Target Start/End: Complemental strand, 30827665 - 30827448
Alignment:
Q  224 tctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctc 323  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||| ||||||||| ||||| |||    
T  30827665 tctctcttgtccaactctccatatatacaacatttggatcttagtttcacttgttttctcaatgatcaacatgttgccgacttctctttgcttcttcctc 30827566  T
Q  324 atttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||     
T  30827565 atttagtgtctataaaccttactcgatgttggaagctaacagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatggt 30827466  T
Q  424 gtacacaactattgggaa 441  Q
      ||||||||||||||||    
T  30827465 tcacacaactattgggaa 30827448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 209 - 450
Target Start/End: Complemental strand, 33161089 - 33160848
Alignment:
Q  209 attaatggaattagctctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttct 308  Q
    ||||||||| ||  |||||| |||||||||| ||  ||||||||| |||||||||| | ||||||| ||||||| |||||||||||||||||||||||||    
T  33161089 attaatggatttcactctctcttatccaactgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttct 33160990  T
Q  309 ctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttag 408  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||| || |||| ||| ||||||||||||||    
T  33160989 ctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcacttag 33160890  T
Q  409 tgacatcaaaatggagtacacaactattgggaatgagagtat 450  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  33160889 tgacatcaaaatggaatgcacaactattgggaaagagagtat 33160848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 494 - 606
Target Start/End: Complemental strand, 30827416 - 30827304
Alignment:
Q  494 agcccgaaagtaaggtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttg 593  Q
    ||||| ||| ||| |||||||| ||||||| ||||| |||||||||||||| |||||||  |||||||| |||| ||||||||||| |||||||||||||    
T  30827416 agccccaaattaaagtctctttctttggctggctgttaatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttg 30827317  T
Q  594 atttgagctattg 606  Q
    |||||||||||||    
T  30827316 atttgagctattg 30827304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 491 - 612
Target Start/End: Complemental strand, 33160816 - 33160695
Alignment:
Q  491 gtaagcccgaaagtaaggtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgc 590  Q
    ||||||||  || ||| |||||||| ||||||   ||||||  ||||||||||| |||||||  |||||||| ||| ||| |||||||| ||||||||||    
T  33160816 gtaagccctcaattaaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgc 33160717  T
Q  591 ttgatttgagctattggaagga 612  Q
    ||||||||||||||| ||||||    
T  33160716 ttgatttgagctattcgaagga 33160695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 19468116 - 19468236
Alignment:
Q  303 agttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttc 402  Q
    |||| ||||||||||||| | |||| |||||||||||||||| || ||||  | | || ||| | ||| |||||||| | |||||||  |||||||||||    
T  19468116 agttgtctttgtttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttc 19468215  T
Q  403 acttagtgacatcaaaatgga 423  Q
    ||||||||| |||||||||||    
T  19468216 acttagtgagatcaaaatgga 19468236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 19468344 - 19468397
Alignment:
Q  546 aaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 599  Q
    ||||||| ||| |||||||||||||||| ||||| ||| || ||||||||||||    
T  19468344 aaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 30827754 - 30827713
Alignment:
Q  135 attgtttccctttgctcaaacacctcgacctctctcgccctt 176  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  30827754 attgtttccctttgctcaaacaactcaacctctctcaccctt 30827713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 247 - 423
Target Start/End: Original strand, 7993737 - 7993913
Alignment:
Q  247 tatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttact 346  Q
    |||||||||||| ||||||| |   | | ||||||| ||||||| ||||||||| ||||| || ||  |||||| | ||||||||||||||||||||| |    
T  7993737 tatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgtctataaaccttagt 7993836  T
Q  347 ggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    | |||| ||| ||| |||||||||||||||||||| ||||||| ||| ||||| |||||| |||| |||||||||||    
T  7993837 gaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgga 7993913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 446
Target Start/End: Original strand, 6602798 - 6602959
Alignment:
Q  285 atgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgct 384  Q
    |||||||||||| |||| | || |||||||||||| || ||||||||||||||||||||| || |||||   | || ||||||| | |||||||||| ||    
T  6602798 atgatcaacatgctgcccacttttctttgtttcttactaatttggtgtctataaaccttagtgaatgttcctacctcacagaattatccttgttttcact 6602897  T
Q  385 cgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattgggaatgaga 446  Q
     |||| ||| ||||||||||||||||| |||||||||||  |||||  ||||||||| ||||    
T  6602898 tgttaaaaactgtccttcacttagtgagatcaaaatggaagacacagatattgggaaagaga 6602959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 208 - 436
Target Start/End: Complemental strand, 6403464 - 6403236
Alignment:
Q  208 tattaatggaattagctctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttc 307  Q
    ||||||||||||   ||||||||||||||| | |   | |||||||||||||||||||| | ||| | ||||||| ||||||  ||||||||| |||||     
T  6403464 tattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagttt 6403365  T
Q  308 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcactta 407  Q
    |||||||||||   | | ||||||||||||||||||| |  ||||| || ||| | | ||||| |||||||||| ||| ||   |||||||||||||| |    
T  6403364 tctttgtttctacatgagttggtgtctataaaccttaattcatgtttgatgcttagaaaatcaaccttgttttcactcctttcgaattgtccttcactca 6403265  T
Q  408 gtgacatcaaaatggagtacacaactatt 436  Q
    |||| |||||||||||  |||||| ||||    
T  6403264 gtgaaatcaaaatggaacacacaagtatt 6403236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 277 - 440
Target Start/End: Original strand, 6596531 - 6596694
Alignment:
Q  277 ttttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttg 376  Q
    |||||| ||||||  ||||||||| | ||||||||||||||||| | ||||||| ||||||||||||| |   ||||  | ||| |||||||||||| ||    
T  6596531 ttttcttaatgatacacatgttgctgggttctctttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtg 6596630  T
Q  377 ttttcgctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattggga 440  Q
    ||||| ||||| | |||||||||||| |||||||| ||||||||| |  ||||| |||||||||    
T  6596631 ttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattggga 6596694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 324 - 423
Target Start/End: Complemental strand, 19632885 - 19632786
Alignment:
Q  324 atttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||||||||| ||||||| ||  ||||||||||| ||||||| | | ||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  19632885 atttggtgtctatcaaccttaatgactgttggaagctcacagaattatcattgttttcgctcgttagtaattgtccttcacttagtgagatcaaaatgga 19632786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 247 - 448
Target Start/End: Complemental strand, 7132161 - 7131960
Alignment:
Q  247 tatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttact 346  Q
    ||||||||||||| |||||||   |||  ||||||| |||||| |||||||| | ||||| |||| |||||||  | | ||  ||||| ||||||||  |    
T  7132161 tatacaacatttgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtcttggtttcttcgtgacttactgtctgtaaaccttcgt 7132062  T
Q  347 ggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattgggaatgaga 446  Q
    |  ||||||| ||| ||||||| |||||||| ||| ||||||| ||| || ||||||||||||||  |||||||||| |||||| |||| ||||| ||||    
T  7132061 gactgttggatgctcacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaatacacagctatagggaaagaga 7131962  T
Q  447 gt 448  Q
    ||    
T  7131961 gt 7131960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 245 - 401
Target Start/End: Complemental strand, 6432697 - 6432541
Alignment:
Q  245 tatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 344  Q
    ||||||||||||||||||||| ||     | ||||||| ||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||    
T  6432697 tatatacaacatttggatctttgtggacttcattttctaaatgatcaacatgttgccgggtcgtctttgtttcttgctgatttggtgtctataaacctta 6432598  T
Q  345 ctggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtcctt 401  Q
     |   ||| |  | || |||||||||||| ||||||| ||||||  ||| |||||||    
T  6432597 gtaattgtcgatatctcacagaatcagccctgttttcactcgttggaaactgtcctt 6432541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 508 - 600
Target Start/End: Original strand, 6594413 - 6594505
Alignment:
Q  508 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgag 600  Q
    |||||||||||||||||||||| |  |||||| |||| ||||||| |||||||||||||| ||||||||||  |||||| |||||||||||||    
T  6594413 gtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 6395408 - 6395291
Alignment:
Q  226 tctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcat 325  Q
    |||| ||||||| ||||| | ||||||||||||||| ||| |||||| || |  ||| ||||||||||||||||  || |||||||||||||||| | ||    
T  6395408 tctgctatccaagtctccatgtatacaacatttggaactttgtcacattactagtctaaatgatcaacatgttgttgatttctctttgtttcttggtaat 6395309  T
Q  326 ttggtgtctataaacctt 343  Q
    ||||| ||||||||||||    
T  6395308 ttggtatctataaacctt 6395291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 247 - 448
Target Start/End: Original strand, 6594158 - 6594359
Alignment:
Q  247 tatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttact 346  Q
    ||||||||||||| ||||||   || ||  |||||| ||||||||||||||||||||||| |||||||||||||||  ||||  ||| || ||||||| |    
T  6594158 tatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccattaaccttagt 6594257  T
Q  347 ggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattgggaatgaga 446  Q
       ||     | || ||||||||||| |||||||| || |||| || |||||||| ||||||||| ||||||||||||  ||||| ||| ||||| ||||    
T  6594258 tcttgcaaccatctcacagaatcagctttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaatatcgggaaggaga 6594357  T
Q  447 gt 448  Q
    ||    
T  6594358 gt 6594359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 10579426 - 10579499
Alignment:
Q  363 cagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactatt 436  Q
    ||||||||||||||||||| ||||| | |||||||||||| |||||||| |||||||||||  ||||| |||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaaaacacagctatt 10579499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 8913661 - 8913721
Alignment:
Q  284 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 344  Q
    |||||||||||||||| | |||| ||||||||||||| | |||||||||||||||||||||    
T  8913661 aatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaacctta 8913721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 508 - 599
Target Start/End: Original strand, 7993989 - 7994080
Alignment:
Q  508 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 599  Q
    |||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| |||||||||| || ||| || |||| |||||||    
T  7993989 gtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttcccaaatttgcagatgctcgatttga 7994080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 6399802 - 6399688
Alignment:
Q  226 tctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcat 325  Q
    |||||||||||| ||||| | ||||||| ||||||| ||| || ||||| ||||    ||||||||||||||||  || |||||| ||||||||  | ||    
T  6399802 tctgttatccaagtctccatgtatacaatatttggaactttgtaacactgattta---aatgatcaacatgttgttgatttctctgtgtttcttagtaat 6399706  T
Q  326 ttggtgtctataaacctt 343  Q
    ||||||||| ||||||||    
T  6399705 ttggtgtctgtaaacctt 6399688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 344
Target Start/End: Complemental strand, 14821255 - 14821137
Alignment:
Q  226 tctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcat 325  Q
    |||||||||||| ||||| | ||||||||||||||| |||     |||| ||||||| ||| ||||||||||||  || || | ||||| ||||| | ||    
T  14821255 tctgttatccaagtctccatgtatacaacatttggaacttcaaagcacttattttctaaataatcaacatgttgttgatttttgtttgtgtcttggtaat 14821156  T
Q  326 ttggtgtctataaacctta 344  Q
    ||||| |||||||||||||    
T  14821155 ttggtatctataaacctta 14821137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 6410473 - 6410376
Alignment:
Q  324 atttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatg 421  Q
    ||||||||||| ||| ||||  |  ||||| ||| || ||||||| ||||  |||||| ||||||| ||||||||||||||||| ||| |||||||||    
T  6410473 atttggtgtctctaagcctttattcatgtttgaatctcacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatg 6410376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 597
Target Start/End: Original strand, 6589180 - 6589219
Alignment:
Q  558 tgtttgcttccattttccccaacttggaggtgcttgattt 597  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  6589180 tgtttgcttccattttccccaatttagaggtgcttgattt 6589219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 601
Target Start/End: Complemental strand, 9411596 - 9411554
Alignment:
Q  559 gtttgcttccattttccccaacttggaggtgcttgatttgagc 601  Q
    ||||||||||||||||||||| ||| || ||||||||||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagc 9411554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 7119547 - 7119482
Alignment:
Q  383 ctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattgggaatgagagt 448  Q
    ||||||| ||| || ||||||||||||||  |||||||||| |||||| |||| ||||| ||||||    
T  7119547 ctcgttagaaactgcccttcacttagtgagttcaaaatggaatacacagctatagggaaagagagt 7119482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 217 - 448
Target Start/End: Original strand, 20477613 - 20477838
Alignment:
Q  217 aattagctctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgttt 316  Q
    |||| ||||||| |||||||| | ||| | |||||||||||||||||||    | ||| ||||||| |||||||||| ||||||||||||      ||||    
T  20477613 aatttgctctctattatccaagtgtccatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt------gttt 20477706  T
Q  317 cttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatca 416  Q
    |||||  |||||||||||||||| |||| ||  |||| | | || ||||||| |||||||| ||| || |||| ||| |||||||||||| |||| ||||    
T  20477707 cttgcggatttggtgtctataaatcttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatca 20477806  T
Q  417 aaatggagtacacaactattgggaatgagagt 448  Q
    ||||||| |||||| |||| ||||| ||||||    
T  20477807 aaatggaatacacatctatcgggaaagagagt 20477838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 38267108 - 38267205
Alignment:
Q  247 tatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 344  Q
    ||||||||||||||| |||    | ||| ||||||||| |||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  38267108 tatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctcatctggtgtctataaacctta 38267205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 37938417 - 37938351
Alignment:
Q  276 attttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacct 342  Q
    ||||||||| |||||| ||||| || ||||| |||||||||||| || |||| ||||| ||||||||    
T  37938417 attttctcactgatcaccatgtcgctgagttgtctttgtttcttcctgatttagtgtcaataaacct 37938351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 224 - 447
Target Start/End: Original strand, 3438182 - 3438404
Alignment:
Q  224 tctctgttatccaactctccgtatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctc 323  Q
    |||||||||||||| | ||  | |||||||||||||||||||    | ||| | ||||| |||||||  ||||||| | |||| ||  |||||| || |     
T  3438182 tctctgttatccaagtgtcaatgtatacaacatttggatcttcaaaa-acttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtg 3438280  T
Q  324 atttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||||||||||||||||| ||  |||| || ||| ||| ||| |||||| ||||| ||| |||  |||||||||||||||||||| || ||||||||    
T  3438281 atttggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactcattagtaattgtccttcacttagtgagataaaaatgga 3438380  T
Q  424 gtacacaactattgggaatgagag 447  Q
     | |||| |||||||| |||||||    
T  3438381 atgcacatctattggggatgagag 3438404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 284 - 423
Target Start/End: Original strand, 55908317 - 55908456
Alignment:
Q  284 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgc 383  Q
    ||||||||  |||| || ||||| ||||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||| ||||| | |    
T  55908317 aatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcac 55908416  T
Q  384 tcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||  |||||||||||||||| |||  ||||||||||    
T  55908417 tcgttaggaattgtccttcacttattgaggtcaaaatgga 55908456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 508 - 606
Target Start/End: Original strand, 10634241 - 10634339
Alignment:
Q  508 gtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 606  Q
    ||||||||||||||||| |||| |    ||| ||||| || |||| || |||||| |||||||||| ||||||||||| ||||| |||||||| |||||    
T  10634241 gtctctttgtttggctcactgtgagctgttgggagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttattg 10634339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 55908570 - 55908626
Alignment:
Q  546 aaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagct 602  Q
    ||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||    
T  55908570 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 55908626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 423
Target Start/End: Complemental strand, 547399 - 547284
Alignment:
Q  308 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcactta 407  Q
    ||||||||||||| | |||||| || ||||||||||| |   ||| || | || ||| | | |||||||||| | |||||||  |||||| |||||||||    
T  547399 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 547300  T
Q  408 gtgacatcaaaatgga 423  Q
    |||| |||||||||||    
T  547299 gtgagatcaaaatgga 547284  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 53761401 - 53761516
Alignment:
Q  308 tctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcactta 407  Q
    |||||| |||||| | |||||||||| |||||||||| | | ||||  ||| | ||| |||  ||||||||| | || | || ||| |||||||||||||    
T  53761401 tctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatcacaaaattggccttgtttgcacttgctaaaaactgtccttcactta 53761500  T
Q  408 gtgacatcaaaatgga 423  Q
    |||| |||||||||||    
T  53761501 gtgagatcaaaatgga 53761516  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 1600882 - 1600816
Alignment:
Q  313 gtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttt 379  Q
    |||||||| | ||||||| ||||||||||||| || |||| | | ||| ||||||||||||||||||    
T  1600882 gtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgttt 1600816  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 284 - 423
Target Start/End: Original strand, 1037253 - 1037392
Alignment:
Q  284 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgc 383  Q
    ||||||||  |||| || ||||| ||||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||| ||||| | |    
T  1037253 aatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcac 1037352  T
Q  384 tcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||  |||||||||||||||| |||  ||||||||||    
T  1037353 tcgttaggaattgtccttcacttattgaggtcaaaatgga 1037392  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 1037506 - 1037562
Alignment:
Q  546 aaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagct 602  Q
    ||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||    
T  1037506 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 1037562  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 421
Target Start/End: Original strand, 15091714 - 15091880
Alignment:
Q  252 aacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatg 351  Q
    |||||||||| ||| || |||||| ||||   ||||||||||||||||  || |||||| | ||||||  | ||||||||||||||||||||| ||  ||    
T  15091714 aacatttggaactttgtaacactagtttt---aatgatcaacatgttgttgatttctctctatttcttagtaatttggtgtctataaaccttaatgcttg 15091810  T
Q  352 ttggaagctgacagaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatg 421  Q
    | | || || |||||| || |||||||||| |||| || ||| |||||||| |||| ||| |||||||||    
T  15091811 tcgtaatctcacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatg 15091880  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 423
Target Start/End: Original strand, 10169728 - 10169867
Alignment:
Q  284 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgc 383  Q
    ||||||||  ||||||  ||||| ||||||||| ||| | |||| |||||| ||||||||| |  ||||| | || | ||| | ||| |||||||| | |    
T  10169728 aatgatcactatgttgatgagttttctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcac 10169827  T
Q  384 tcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||  |||||||||||||||||||| |||||||||||    
T  10169828 tcgttaggaattgtccttcacttagtgagatcaaaatgga 10169867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 423
Target Start/End: Original strand, 10177253 - 10177392
Alignment:
Q  284 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgc 383  Q
    ||||||||  ||||||  ||||| ||||||||| ||| | |||| |||||| ||||||||| |  ||||| | || | ||| | ||| |||||||| | |    
T  10177253 aatgatcactatgttgatgagttttctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcac 10177352  T
Q  384 tcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||  |||||||||||||||||||| |||||||||||    
T  10177353 tcgttaggaattgtccttcacttagtgagatcaaaatgga 10177392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 423
Target Start/End: Complemental strand, 427 - 288
Alignment:
Q  284 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgttttcgc 383  Q
    ||||||||  ||||||| ||||| |||||||||||||   |||||||||||||||| |||| || |||| | | ||| ||| | ||| || ||||| | |    
T  427 aatgatcatgatgttgcagagttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcac 328  T
Q  384 tcgttataaattgtccttcacttagtgacatcaaaatgga 423  Q
    ||||||  |||| ||||||||||| ||| |||||||||||    
T  327 tcgttaggaattatccttcacttattgagatcaaaatgga 288  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 441
Target Start/End: Original strand, 514314 - 514474
Alignment:
Q  281 ctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagccttgtttt 380  Q
    |||||||||||||||||||  || || || |||||||||| ||||||| ||||||||||| | |    |||||  | ||| ||| | | | ||||||||     
T  514314 ctcaatgatcaacatgttgtggatttgtcattgtttcttggtcatttgttgtctataaacttgagcaaatgttcaatgctcacacatttatccttgtttg 514413  T
Q  381 cgctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattgggaa 441  Q
    | || ||||  || ||||||||||||||||| ||||||||| | ||||||| |||||||||    
T  514414 cacttgttaagaactgtccttcacttagtgagatcaaaatgaattacacaagtattgggaa 514474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 17627729 - 17627812
Alignment:
Q  365 gaatcagccttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggagtacacaactattgggaatgagagt 448  Q
    ||||||||||||||||| |||||||  || ||||||||||||| ||| || |||||||| | |||| |||||||| | ||||||    
T  17627729 gaatcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcacatctattggggaagagagt 17627812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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