View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451Eco15 (Length: 270)
Name: NF0451Eco15
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451Eco15 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 16303024 - 16303247
Alignment:
| Q |
4 |
caattacagcaaacaacccgagtacaacagcctctaaaaaagaca-aaattaggagagctctatgatcgacccaatgaacgattaatctatagggtctaa |
102 |
Q |
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| T |
16303024 |
caattgcagcaaacaacccgagtacaacatcctctaaaaaagacagaaattagaagagctctatgatcgacccaatgaacgattaatctacagggtctaa |
16303123 |
T |
|
| Q |
103 |
actgtccaatgacaagagccctattaatgctagagtaaagctctaaatgaatttaacccactcaaattgacattagaagaattaaatctaagaatcaagc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||| ||| |
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| T |
16303124 |
actgtccaatgacaagagccctattaatgctagagtaaagctctaaataaatttaacccacttaaattgacattagaagaatcaaatctgagaatcgagc |
16303223 |
T |
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| Q |
203 |
caacaacactaaatcaactcaatt |
226 |
Q |
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||||||||||| | |||||||||| |
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| T |
16303224 |
caacaacactagaccaactcaatt |
16303247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 12100868 - 12100905
Alignment:
| Q |
223 |
aattcaagaatacgttacgggctagattgactctaaac |
260 |
Q |
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| T |
12100868 |
aattcaagaatacgttacgggctagattgactctaaac |
12100905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 148497 - 148464
Alignment:
| Q |
227 |
caagaatacgttacgggctagattgactctaaac |
260 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
148497 |
caagaatgcgttacgggctagattgactctaaac |
148464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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