View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Eco18 (Length: 521)

Name: NF0451Eco18
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Eco18
NF0451Eco18
[»] chr3 (2 HSPs)
chr3 (7-518)||(32930526-32931040)
chr3 (176-257)||(41857432-41857513)
[»] chr2 (6 HSPs)
chr2 (163-300)||(2336619-2336756)
chr2 (157-227)||(13154480-13154550)
chr2 (169-263)||(13766785-13766881)
chr2 (193-257)||(35292025-35292089)
chr2 (193-250)||(33810796-33810853)
chr2 (199-263)||(29873600-29873664)
[»] chr1 (2 HSPs)
chr1 (200-263)||(24448309-24448372)
chr1 (212-263)||(11400660-11400711)
[»] chr7 (3 HSPs)
chr7 (171-257)||(32578594-32578680)
chr7 (193-267)||(12421719-12421793)
chr7 (157-237)||(42730305-42730385)
[»] chr8 (2 HSPs)
chr8 (193-263)||(4715301-4715371)
chr8 (199-264)||(9620738-9620803)
[»] chr6 (1 HSPs)
chr6 (202-263)||(8481960-8482021)
[»] chr4 (2 HSPs)
chr4 (189-250)||(43119434-43119495)
chr4 (189-261)||(45834478-45834550)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 518
Target Start/End: Original strand, 32930526 - 32931040
Alignment:
Q  7 ataatttacacatgagagtaatgtgtgttatgtcgatgcttattaagagaaatnnnnnnnncaaatgaagaattgaaataaagtaaattttagtggtgat 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||||    
T  32930526 ataatttacacatgagagtaatgtgtgttatgtcaatgcttattaagagaaataaaaaaaacaaatgaagaattgaaataaagtaaattttagcggtgat 32930625  T
Q  107 tacactttatatcctctctggtgtaatttacatatacgagaataaagagtgattgatgtgtagtaagtatgagttagaagcttcatattgtttagaaaag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  32930626 tacactttatatcctctctggtgtaatttacatatacgagaataaagagtgattgatgtgtagtaagtatgagttagaagtcttatattgtttagaaaag 32930725  T
Q  207 tagaagttgaacattttataaatgagaagacttataaactcaatgtctta-agattttaaatttacgtgcggtgttcaactcacatgtgtggttgatgta 305  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  32930726 tagaagttgaacattttataagtgagatgactcataaactcaatgtcttagagattttgagtttacgtgtggtgttcaactcatatgtgtggttgatgta 32930825  T
Q  306 aactcaatgtgaatgatggtatgcctctcctcgtgactcaacattgtgatctttcaccgttcatcaaaagagagaatacatgagaaatttagataattga 405  Q
    |||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32930826 aactcaatgtgaatgatgatctacctttcctcgtgactcaacattgtgatctttcaccattcatcaaaagagagaatacatgagaaatttagataattga 32930925  T
Q  406 atttgaatggtagtagattacactttattctcccttgtgtaaattactcatgagataatcaatgtacacaaacttgttgaaatattaa--gtgaggcttc 503  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32930926 atttgaatggtagtagattacactttattctcccttgcgtaaattactcatgagataatcaatgtacacaaacttgttgaaatattaagtgtgaggcttc 32931025  T
Q  504 tcttaatcacaattg 518  Q
    |||||||||||||||    
T  32931026 tcttaatcacaattg 32931040  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 41857432 - 41857513
Alignment:
Q  176 tgagttagaagcttcatattgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaa 257  Q
    |||| |||||| |||| |||||| |||||  |||| ||| |||||||||||||||| || ||  |||||||||||| |||||    
T  41857432 tgagatagaagtttcacattgttaagaaatatagaggtttaacattttataaatgataacacccataaactcaatgacttaa 41857513  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 2336619 - 2336756
Alignment:
Q  163 tgtgtagtaagtatgagttagaagcttcatattgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagattt 262  Q
    ||||||| | || ||||||||||| |||| |||| |||||||||| || |||||||| ||||||| ||||| |||  ||||| |||||| ||||||||||    
T  2336619 tgtgtagcatgtgtgagttagaagtttcaaattgcttagaaaagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattt 2336718  T
Q  263 taaatttacgtgcggtgttcaactcacatgtgtggttg 300  Q
    |   || |  || ||||| |||||||| ||||||||||    
T  2336719 tgggttaagatgtggtgtccaactcacttgtgtggttg 2336756  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 13154550 - 13154480
Alignment:
Q  157 gattgatgtgtagtaagtatgagttagaagcttcatattgtttagaaaagtagaagttgaacattttataa 227  Q
    ||||| ||||||| ||||||||||||||||  ||| |||| |||||||||| || |||||||| |||||||    
T  13154550 gattgttgtgtagcaagtatgagttagaagtctcacattgcttagaaaagtggaggttgaacactttataa 13154480  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 13766785 - 13766881
Alignment:
Q  169 gtaagtatgagttagaagcttcatattgtttagaaaagtagaagttgaacattttataaa--tgagaagacttataaactcaatgtcttaagatttt 263  Q
    |||||| |||||||||||  | | ||||||||||||||| || |||||  ||||||||||  ||||| |||| |||||||||||| |||||| ||||    
T  13766785 gtaagtgtgagttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggtttt 13766881  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 35292025 - 35292089
Alignment:
Q  193 attgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaa 257  Q
    ||||||||||||  |||| ||| | ||||||||||||||||| |||||||||| |||| ||||||    
T  35292025 attgtttagaaatatagaggtttatcattttataaatgagaaaacttataaacacaatatcttaa 35292089  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 33810796 - 33810853
Alignment:
Q  193 attgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaat 250  Q
    ||||||| |||||||||| |||||||||||||||| |||   |||| |||||||||||    
T  33810796 attgtttggaaaagtagaggttgaacattttataagtgaagtgactcataaactcaat 33810853  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 29873664 - 29873600
Alignment:
Q  199 tagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagatttt 263  Q
    ||||||||| || |||||||||||||||| || || |||| ||||||||| || |||||| ||||    
T  29873664 tagaaaagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggtttt 29873600  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 24448309 - 24448372
Alignment:
Q  200 agaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagatttt 263  Q
    |||||||| ||||||||||||||||||| ||||| | || ||||||||| ||||||||||||||    
T  24448309 agaaaagtggaagttgaacattttataagtgagagggctcataaactcattgtcttaagatttt 24448372  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 11400660 - 11400711
Alignment:
Q  212 gttgaacattttataaatgagaagacttataaactcaatgtcttaagatttt 263  Q
    |||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||    
T  11400660 gttgaacattttataagtgagatgacatataaacttaatgtcttaaggtttt 11400711  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 32578594 - 32578680
Alignment:
Q  171 aagtatgagttagaagcttcatattgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaa 257  Q
    |||| ||||||||||   ||||||| |||| |||| ||||||||||||| |||||||||||| ||||| ||| |||||||| |||||    
T  32578594 aagtgtgagttagaaatctcatattatttaaaaaattagaagttgaacactttataaatgagtagactcatagactcaatgacttaa 32578680  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 12421793 - 12421719
Alignment:
Q  193 attgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagattttaaat 267  Q
    |||||||| |||| |||| |||||| ||||||||| ||||| || | ||||||||||| | ||||||||||||||    
T  12421793 attgtttaaaaaattagaggttgaatattttataactgagatgattcataaactcaatattttaagattttaaat 12421719  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 42730305 - 42730385
Alignment:
Q  157 gattgatgtgtagtaagtatgagttagaagcttcatattgtttagaaaagtagaagttgaacattttataaatgagaagac 237  Q
    ||||| ||||||| |||| ||||||||||| | || || | || ||||||| || ||||| |||||||||||||| |||||    
T  42730305 gattgttgtgtagcaagtctgagttagaagttccacatcggtttgaaaagtggaggttgatcattttataaatgaaaagac 42730385  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 4715301 - 4715371
Alignment:
Q  193 attgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagatttt 263  Q
    |||||| |||||||| || |||||||| ||||||||||||| ||  |||||||||| | ||||||||||||    
T  4715301 attgttaagaaaagtggaggttgaacactttataaatgagacgatctataaactcattatcttaagatttt 4715371  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 9620803 - 9620738
Alignment:
Q  199 tagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagatttta 264  Q
    |||||||||||||||||| || ||||||| ||||| |||  ||||||||| || ||||||||||||    
T  9620803 tagaaaagtagaagttgatcactttataagtgagaggacccataaactcattgccttaagatttta 9620738  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 8481960 - 8482021
Alignment:
Q  202 aaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagatttt 263  Q
    |||||| || |||||||| ||||||||||||| |||| ||||||||| || |||||||||||    
T  8481960 aaaagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagatttt 8482021  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 43119495 - 43119434
Alignment:
Q  189 tcatattgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaat 250  Q
    |||||||| |||||||| | || |||||||| ||||||||||| |||||| ||||| |||||    
T  43119495 tcatattgcttagaaaattggatgttgaacactttataaatgaaaagactcataaattcaat 43119434  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 45834478 - 45834550
Alignment:
Q  189 tcatattgtttagaaaagtagaagttgaacattttataaatgagaagacttataaactcaatgtcttaagatt 261  Q
    ||||||||||||||||| | || |||||  ||||||||| |||| |||||||||| |||  || |||||||||    
T  45834478 tcatattgtttagaaaaatggaggttgattattttataagtgagcagacttataagctcgttgccttaagatt 45834550  T

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