View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451Eco20 (Length: 605)
Name: NF0451Eco20
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451Eco20 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 2961287 - 2961421
Alignment:
| Q |
7 |
agacatgtcctaaaatttagggatggttaaatttacaccgtgtaactcgtcccttactcacttgtccccctaattgttatctctattaacgaggttaatt |
106 |
Q |
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| T |
2961287 |
agacatgtcctaaaatttagggatggttaaatttacaccgtgtaactcgtcccttactcacttgtccccctaattgttatctctattaacgaggttaatt |
2961386 |
T |
|
| Q |
107 |
ttttcatagtgattattcaattatatagttcaaat |
141 |
Q |
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| T |
2961387 |
ttttcatagtgattattcaattatatagttcaaat |
2961421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 401 - 602
Target Start/End: Original strand, 2961417 - 2961618
Alignment:
| Q |
401 |
caaatcaaatattttaaatgaatttgaatctcatccaaaaagatagtttaaaggatatgagagtgtcaaaacacatgttttgcatcgaacaacccc-nnn |
499 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
2961417 |
caaatcaaattttttaaatgaatttgaatctcatccaaaaagatagtttaaagg--atgagagtgtcaaaacacattttttgcatcgaacaaccccaaaa |
2961514 |
T |
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| Q |
500 |
nnnngtctaatgtaagactttgatacaacttg-nnnnnnntctcatcaaatttgataagcatgacaaatcaaaaattaatccnaactacgcacgatatca |
598 |
Q |
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| T |
2961515 |
aaaagtctaatgtaagacttggatacaacttgaaaaaaaatctcatcaaatttgataagcatgaaaaatcaaaaattaatccaaactacgcacggtatca |
2961614 |
T |
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| Q |
599 |
attg |
602 |
Q |
| |
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|||| |
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| T |
2961615 |
attg |
2961618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 9792311 - 9792178
Alignment:
| Q |
92 |
ttaacgaggttaattttttcatagtgattattcaattatatagttcaaatagattattatgttatctttattaatgttgtatatacttataattttgttg |
191 |
Q |
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|||| ||| |||| ||||| | |||||||||||||| | || |||||| ||| |||| | ||| ||||||||||| |||||||||||| ||||||||| |
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| T |
9792311 |
ttaatgagattaagtttttaaaagtgattattcaatcagattattcaaagagactattctattagctttattaatgatgtatatacttacaattttgttc |
9792212 |
T |
|
| Q |
192 |
aaattatccttgtggacaacccttttttgtctta |
225 |
Q |
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| T |
9792211 |
aaattatccttctggacaaccctctcttgtctta |
9792178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 92 - 456
Target Start/End: Original strand, 9784267 - 9784635
Alignment:
| Q |
92 |
ttaacgaggttaattttttcata-gtgattattcaattatatagttcaaatagattattatgttatctttattaatgttgtatatacttataattttgtt |
190 |
Q |
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| T |
9784267 |
ttaatgaggttaatttttttaaaagtgattattcaattagattattaaaagagactattctattagcaatattaatgaggtatatacttataattttgtt |
9784366 |
T |
|
| Q |
191 |
gaaattatccttgtggacaacccttttttgtcttaatag---atctgatcttaatttgacatgtagagaaacatgtcagttcaattttggggacaatttt |
287 |
Q |
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| T |
9784367 |
caaattatcctt---gacaaccctctcttgtctt-atagattatctggtcttaatttaacccgtcgagcaacaagtcaattcaattatggggacagtttt |
9784462 |
T |
|
| Q |
288 |
ggatttacataataacctgataaaaatttagagttgagt---ggacaagtatagcatgttcgaacttgt-tcattgtccacccctactatatacttttga |
383 |
Q |
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||| |||||||||| | |||||| |||||| | | ||| || ||||||| |||| | ||||||| |||| |||||| | ||||| |||||||| |
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| T |
9784463 |
agatctacataataaaccgataaacatttagtgctaagtaagggggaagtataatatgtcccaacttgtcacatt-cccaccctttctataaacttttga |
9784561 |
T |
|
| Q |
384 |
tgcttttttgtaagttacaaatcaaatattttaaatgaatttgaatctcatccaa-aaagatagtttaaaggat |
456 |
Q |
| |
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|| || |||||||||||||| ||||||||||| ||| ||| ||||| ||| || ||| ||||||||||||| |
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| T |
9784562 |
tgtcttcttgtaagttacaaaccaaatattttatatgcgtttaaatcttatctaacaaaattagtttaaaggat |
9784635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 9792012 - 9791966
Alignment:
| Q |
395 |
aagttacaaatcaaatattttaaatgaatttgaatctcatccaaaaa |
441 |
Q |
| |
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|||||||||||||||||| ||| ||| ||||||||||||||||||| |
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| T |
9792012 |
aagttacaaatcaaatatcttatatgcctttgaatctcatccaaaaa |
9791966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 450
Target Start/End: Complemental strand, 23734998 - 23734962
Alignment:
| Q |
414 |
ttaaatgaatttgaatctcatccaaaaagatagttta |
450 |
Q |
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|||||||||||||||| |||||||||||| ||||||| |
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| T |
23734998 |
ttaaatgaatttgaatttcatccaaaaagttagttta |
23734962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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