View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Eco21 (Length: 168)

Name: NF0451Eco21
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Eco21
NF0451Eco21
[»] chr5 (10 HSPs)
chr5 (10-166)||(37400483-37400637)
chr5 (10-166)||(37697122-37697276)
chr5 (10-166)||(37640207-37640361)
chr5 (10-166)||(37711959-37712113)
chr5 (10-166)||(37703003-37703157)
chr5 (13-166)||(37533438-37533589)
chr5 (13-166)||(37594662-37594813)
chr5 (13-166)||(37824233-37824384)
chr5 (13-166)||(37436045-37436196)
chr5 (13-116)||(37392613-37392714)
[»] chr3 (1 HSPs)
chr3 (13-165)||(14553448-14553598)
[»] chr4 (2 HSPs)
chr4 (10-166)||(16842547-16842701)
chr4 (63-117)||(24217460-24217513)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 7e-60; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 7e-60
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 37400637 - 37400483
Alignment:
Q  10 gagaactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  37400637 gagaactcaccaatgaaccctgtgagattgttgttgctgaggtacaactcta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaa 37400540  T
Q  110 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  37400539 catgttatcacccaaaaacacatagctcaattttgaacgttttgtgatttcaattgg 37400483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 37697122 - 37697276
Alignment:
Q  10 gagaactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaa 109  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||    || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  37697122 gagaactcaccaatgaaccctgtgaggtggttgctgctgaggtccaggtata-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaa 37697219  T
Q  110 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37697220 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 37697276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 37640207 - 37640361
Alignment:
Q  10 gagaactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaa 109  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  37640207 gagaactcaccaatgaaccctgtgagattgttgtcactgaggtacaactcta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaa 37640304  T
Q  110 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    ||||||||||||||||  |||||| ||||||||||||||||||| ||||||||||||    
T  37640305 catgttatcatccaaacccacatatctcaatttggaacgttttgcgatttcaattgg 37640361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 37711959 - 37712113
Alignment:
Q  10 gagaactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaa 109  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||||| ||| |||| |||||||||||||||||||| ||||| |||||||||||||||    
T  37711959 gagaactcaccaatgaaccctgtgaggtggttgtcgctgaggcccaactcta-acaatgaaggcaaagaataacaccactgtgg-aattgttccatttaa 37712056  T
Q  110 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  37712057 catgttatcatccaaaaacacatagctcaattttgaacgttttgtgatttcaattgg 37712113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 37703003 - 37703157
Alignment:
Q  10 gagaactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaa 109  Q
    |||||||||||||||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  37703003 gagaactcaccaatgaaccctgtgaggtggttgtcgccgaggaccaacccta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaa 37703100  T
Q  110 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||||||   ||||  |||||| |||||||| |||||||||||||||||||||||    
T  37703101 catgttatccctcaaacccacatagctcaattttgaacgttttgtgatttcaattgg 37703157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 37533438 - 37533589
Alignment:
Q  13 aactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacat 112  Q
    ||||||||||||||||||||||| | |||||||||||||   ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37533438 aactcaccaatgaaccctgtgaggtggttgttgctgaggtgtaactcta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaacat 37533535  T
Q  113 gttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||||  ||||  |||||| |||||||| |||||||||||||||||||||||    
T  37533536 gttatcactcaaacccacatagctcaattttgaacgttttgtgatttcaattgg 37533589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 37594662 - 37594813
Alignment:
Q  13 aactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacat 112  Q
    |||||||||||||||||||| ||||||||||||||||||  |||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37594662 aactcaccaatgaaccctgtaagattgttgttgctgaggtacaattcta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaacat 37594759  T
Q  113 gttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    ||||||   ||||  |||||| |||||||| |||||||||||||||||||||||    
T  37594760 gttatccctcaaacccacatagctcaattttgaacgttttgtgatttcaattgg 37594813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 37824233 - 37824384
Alignment:
Q  13 aactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacat 112  Q
    ||||||||||||||||||||||| | ||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37824233 aactcaccaatgaaccctgtgaggtggttgtcgctgaggcccaactcta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaacat 37824330  T
Q  113 gttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    ||||      |||  ||||  ||||||||| |||||||||||||||||||||||    
T  37824331 gttaaagcttaaatccacaatactcaattttgaacgttttgtgatttcaattgg 37824384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 37436045 - 37436196
Alignment:
Q  13 aactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacat 112  Q
    ||||||||||||||||||||||||| |||||    ||||  |||| ||| |||| ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  37436045 aactcaccaatgaaccctgtgagatggttgtaatggaggtacaactcta-acaatgaaggcaaataataacaccactgtgg-aattgttccatttaacat 37436142  T
Q  113 gttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||  || | |  |||||| ||||||||  |||||||||| |||||||||||    
T  37436143 gttatattctagacccacatagctcaattttaaacgttttgtaatttcaattgg 37436196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 37392714 - 37392613
Alignment:
Q  13 aactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacat 112  Q
    |||||| |||||||||||||||||| |||||   ||||| ||||| ||||  || |||||||||||||||||||| || || |||||| ||||| |||||    
T  37392714 aactcatcaatgaaccctgtgagatggttgtcattgaggtccaactctat-taatgaaggcaaagaataacaccactgcgg-aattgtaccattaaacat 37392617  T
Q  113 gtta 116  Q
    ||||    
T  37392616 gtta 37392613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 5e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 14553448 - 14553598
Alignment:
Q  13 aactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacat 112  Q
    ||||||||||||||||||||||| | ||||| |||||||   ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14553448 aactcaccaatgaaccctgtgaggtggttgtcgctgagggataactcta-acaacgaaggcaaagaataacaccaatgtgg-aattgttccatttaacat 14553545  T
Q  113 gttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattg 165  Q
    ||||| |   |||  |||||| |||||||| ||||||||||||||||||||||    
T  14553546 gttataacttaaatccacatagctcaattttgaacgttttgtgatttcaattg 14553598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 16842701 - 16842547
Alignment:
Q  10 gagaactcaccaatgaaccctgtgagattgttgttgctgaggaccaaccctatacaacgaaggcaaagaataacaccaatgtggcaattgttccatttaa 109  Q
    |||||||||||||||||||||||||||| ||||| ||  |||  ||||  || ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  16842701 gagaactcaccaatgaaccctgtgagatggttgtagcgaagggacaacttta-acaacgaaggcaaagaataacaccaatttgg-aattgttccatttaa 16842604  T
Q  110 catgttatcatccaaaaacacataactcaatttggaacgttttgtgatttcaattgg 166  Q
    |||||| |||  ||||  |||||| |||||||| |||  ||||||||||||||||||    
T  16842603 catgttctcactcaaacccacatagctcaattttgaagtttttgtgatttcaattgg 16842547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 24217513 - 24217460
Alignment:
Q  63 acaacgaaggcaaagaataacaccaatgtggcaattgttccatttaacatgttat 117  Q
    ||||||||||||| ||||||||||| || || |||||||||||||||||||||||    
T  24217513 acaacgaaggcaaggaataacaccattgcgg-aattgttccatttaacatgttat 24217460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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