View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451Eco3 (Length: 472)
Name: NF0451Eco3
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451Eco3 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Original strand, 27698752 - 27699205
Alignment:
| Q |
7 |
aacattagcatcctttgcagaagaaccactacctgataacagctgttgaatcattatcaatacacttcattattttctcctgcaaaatgtatatagatat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
27698752 |
aacattagcatcctttgcagaagaaccactacctgataacagctgttgaatcatt-tcaatacacttcattactttctcctgcaaaatgtagatagatat |
27698850 |
T |
|
| Q |
107 |
atcaattaattaaaccatgtcataaattaaatcttgagtaaatcaccaaaattgtcctctgaattttagggcgcttttaaattgatctttgaaattgaaa |
206 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| |
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| T |
27698851 |
atcaattaattaaaccatgtcataaactaaatcttgagtaaatcaccaaaattgtcctctgaattttagggagcttttaaaatgatctttaaaattgaaa |
27698950 |
T |
|
| Q |
207 |
gtcttgatcacattagtcgctcaaggacaatttcgagattaaattaattgaccgtcttatttgttttaagttttttaaatttgaatgactattttataat |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27698951 |
gtcttgatcagattagtcgctcaaggacaatttcgagattaaattaattgaccgtcttatttgttttaagttttttaaatttgaatgactattttagaat |
27699050 |
T |
|
| Q |
307 |
atcagtcatttaaaactataaattgacggtcaatttatgatttgaaatgaatgataatctaaaatagacgatgaaaaaatattctaggttgattaattta |
406 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
27699051 |
atcagtcgtttaaaactataaattcacggtcaatttatgatttgaaatgaatgataatctaaaatagacgatgaaaaaatattttagattgatcaattta |
27699150 |
T |
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| Q |
407 |
atctatgaaattgtctgacatcgaccaatgtgatcaagaaaattcaacttcaaaa |
461 |
Q |
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| T |
27699151 |
atctatgaaattgtttgacatcgaccattgtgatctagaaaattcaatttcaaaa |
27699205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 24432709 - 24432673
Alignment:
| Q |
189 |
tgatctttgaaattgaaagtcttgatcacattagtcg |
225 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
24432709 |
tgatatttgaaattgaaagtcctgatcacattagtcg |
24432673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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