View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451Eco4 (Length: 135)
Name: NF0451Eco4
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451Eco4 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 2e-65; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 28158526 - 28158651
Alignment:
| Q |
7 |
aaaagcttaatggttcaatttggatattggttatattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg |
106 |
Q |
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| T |
28158526 |
aaaagcttaatggttcaatttggatattggttatattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg |
28158625 |
T |
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| Q |
107 |
gtgtatccttgatgtggcctcaattg |
132 |
Q |
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| T |
28158626 |
gtgtatccttgatgtggcctcaattg |
28158651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 28169097 - 28169220
Alignment:
| Q |
7 |
aaaagcttaatggttcaatttggatattggttatattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg |
106 |
Q |
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| T |
28169097 |
aaaagcttaatggttcaattgggatattggttatattatatg--cacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgg |
28169194 |
T |
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| Q |
107 |
gtgtatccttgatgtggcctcaattg |
132 |
Q |
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| T |
28169195 |
gtgtatccttgatgtggcctcaattg |
28169220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 28174189 - 28174260
Alignment:
| Q |
45 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatcctt |
116 |
Q |
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| T |
28174189 |
tatatgcacattaacttcaaactgatggggtacatcagacgcatatgaattttcaagattgggtgtatcctt |
28174260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 28161250 - 28161321
Alignment:
| Q |
45 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatcctt |
116 |
Q |
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| T |
28161250 |
tatatgcacattaatttcaagctaattcggtacatcagaagcatagaaaatttcaagattggctgtatcctt |
28161321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 28177224 - 28177292
Alignment:
| Q |
45 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatc |
113 |
Q |
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| T |
28177224 |
tatatgcacattaatttcaagctaattcggtacaacagaagcatataaaatttcaagattggctgtatc |
28177292 |
T |
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