View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Eco5 (Length: 732)

Name: NF0451Eco5
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Eco5
NF0451Eco5
[»] chr1 (1 HSPs)
chr1 (8-708)||(5119423-5120111)


Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 708
Target Start/End: Complemental strand, 5120111 - 5119423
Alignment:
Q  8 ccaggactaacccggttcgccaaatgctgataaatctccaacatccgatccggaggagaaccactttcaatcccaatcccatcctctccaccaaaaccac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5120111 ccaggactaacccggttcgccaaatgctgataaatctccaacatccgatccggaggagaaccactttcaatcccaatcccatcctctccaccaaaaccac 5120012  T
Q  108 aatcctcaccaccattttttcccggacttgaactcgaactcctcccaaacacattctcttccaatacaaaatgagttttccccataaaacaaacattcac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5120011 aatcctcaccaccattttttcccggacttgaactcgaactcctcccaaacacattctcttccaatacaaaatgagttttccccataaaacaaacattcac 5119912  T
Q  208 aggaatcaattcactgccattaccattgaaattcaaatccaaattcaaatcagctcgaccattaggatccaaaagattcacaatttgtccatcttcagaa 307  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5119911 aggaatcaattcactgccattaccattgaaattcaaatc------------agctcgaccattaggatccaaaagattcacaatttgtccatcttcagaa 5119824  T
Q  308 agacccatcttcaaaaaaggcacctttttcacctgatacccgcaaatttcagattctgattgggttggtgaaaccctagagccagcaataaacgatgaac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5119823 agacccatcttcaaaaaaggcacctttttcacctgatacccgcaaatttcagattctgattgggttggtgaaaccctagagccagcaataaacgatgaac 5119724  T
Q  408 cccattcaaagaaaaccaatgaaggtgattcaatcacagcactaccaggaccacttctcctccaaaaaccaataagattatcccattcatgaagaacggt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5119723 cccattcaaagaaaaccaatgaaggtgattcaatcacagcactaccaggaccacttctcctccaaaaaccaataagattatcccattcatgaagaacagt 5119624  T
Q  508 atagagatttctatagagaattttaccttcaccccannnnnnnatttgggtttttgaaccccatcttcgatcacaaagggnaaagccaaagctttgcatc 607  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5119623 atagagatttctatagagaattttaccttcaccccatttttttatttgggtttttgaaccccatcttcgatcacaaaggg-aaagccaaagctttgcatc 5119525  T
Q  608 atcggaacacagnggttccgaattgctttgaagtgcatgcgaatgaagcaatttcaatgggagaca-aaatganaggatgcntagctg-acatcttctgg 705  Q
    ||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||| |||||||||||    
T  5119524 atcggaacagagt-gttccgaattgctttgaggtgcatgcgaatgaagcaatttcaatgggacacagaaatgagaggatgcatagctgaacatcttctgg 5119426  T

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