View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0451Eco8 (Length: 757)

Name: NF0451Eco8
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0451Eco8
NF0451Eco8
[»] chr1 (5 HSPs)
chr1 (9-686)||(14741210-14741885)
chr1 (251-327)||(32515357-32515433)
chr1 (405-440)||(42397694-42397729)
chr1 (254-315)||(6292582-6292643)
chr1 (401-438)||(30259587-30259624)
[»] chr6 (1 HSPs)
chr6 (256-324)||(24973948-24974016)
[»] chr7 (1 HSPs)
chr7 (401-440)||(46213734-46213773)
[»] chr5 (2 HSPs)
chr5 (401-440)||(29588811-29588850)
chr5 (251-292)||(10640066-10640107)
[»] chr3 (4 HSPs)
chr3 (401-439)||(3757980-3758018)
chr3 (251-321)||(5407370-5407440)
chr3 (402-440)||(33307681-33307719)
chr3 (405-439)||(42039091-42039125)
[»] chr8 (1 HSPs)
chr8 (403-440)||(8536150-8536187)


Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 9 - 686
Target Start/End: Complemental strand, 14741885 - 14741210
Alignment:
Q  9 gtcttacgtttgttattcaagcacaaccttatttgaatgctgttcctatgccacttggtcttgaagttacttgtttgaaagcttgtactcattatccaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14741885 gtcttacgtttgttattcaagcacaaccttatttgaatgctgttcctatgccacttggtcttgaagttacttgtttgaaagcttgtactcattatcctac 14741786  T
Q  109 tctttttgatcattttcaaagagagttgcgtgatgttcttcaagatatgcagagtaaaggtttggttgaagattggcgtcaaactcagtcttggaagttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741785 tctttttgatcattttcaaagagagttgcgtgatgttcttcaagatatgcagagtaaaggtttggttgaagattggcgtcaaactcagtcttggaagttg 14741686  T
Q  209 cttaaggagcttgctaattcaggnnnnnnnctttctctttgagcctgtttggattagcttattcgagtttatctgttgacataatcacttttaagattgt 308  Q
    |||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741685 cttaaggagcttgctaattcaggtttttttctttctctttgagcttgtttggattagcttattcgagtttatctgttgacataatcacttttaagattgt 14741586  T
Q  309 ttgggagggcttatagaaagatagaagcagcttatgatatgtaagctctacatgatagcttatatgaaaacagtttgccnnnnnnnnctttctatatttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||  ||||||||    
T  14741585 ttgggagggcttatagaaagatagaagcagcttatgatatgtaagctctacatgatagcttatatgaaaacagtttgcctttt-----ttattatatttt 14741491  T
Q  409 gttacagaaatagcttgtacataagcacttatttatctaaacatggtctttgttatgacataaacatgttttattgttcaaaatatctgacttgcttcga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741490 gttacagaaatagcttgtacataagcacttatttatctaaacatggtctttgttatgacataaacatgttttattgttcaaaatatctgacttgcttcga 14741391  T
Q  509 catactattagcacatgtactaaaacaacatgaataagattaaggactaatgatatgtttggaagagcttattttgagtttatttggacttatgctatta 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741390 catactattagcacatgtactaaaacaacatgaataagattaaggactaatgatatgtttggaagagcttattttgagtttatttggacttatgctatta 14741291  T
Q  609 gttcttgtgtatttctttggaagatgttac-aagtagtttttgatatttatat-anggttttc-aggttattgacttatta 686  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  14741290 gttcttgtgtatttctttggaagatgttacaaagtagtttttgatatttatataagggttttcaaggttatttacttatta 14741210  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 32515357 - 32515433
Alignment:
Q  251 gcctgtttggattagcttattcgagtttatctgttgacataatcacttttaagattgtttgggagggcttatagaaa 327  Q
    |||||||||||||||| |||| ||||||||||  | |||||| ||||| | ||| |||||||||| |||||| ||||    
T  32515357 gcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaa 32515433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 42397729 - 42397694
Alignment:
Q  405 ttttgttacagaaatagcttgtacataagcacttat 440  Q
    |||||||||||||||||||| |||||||||||||||    
T  42397729 ttttgttacagaaatagcttatacataagcacttat 42397694  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 6292643 - 6292582
Alignment:
Q  254 tgtttggattagcttattcgagtttatctgttgacataatcacttttaagattgtttgggag 315  Q
    ||||||||||  |||||| ||| ||||||  |||||||| ||||||| ||||||||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggag 6292582  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 30259587 - 30259624
Alignment:
Q  401 tatattttgttacagaaatagcttgtacataagcactt 438  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  30259587 tatattttgttatagaaatagcttgtgcataagcactt 30259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 24973948 - 24974016
Alignment:
Q  256 tttggattagcttattcgagtttatctgttgacataatcacttttaagattgtttgggagggcttatag 324  Q
    |||||||||||||||| ||  ||||||| |||||||| ||||| ||||||||||||| || ||||||||    
T  24973948 tttggattagcttatttgaacttatctgctgacataagcacttgtaagattgtttggtagagcttatag 24974016  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 440
Target Start/End: Complemental strand, 46213773 - 46213734
Alignment:
Q  401 tatattttgttacagaaatagcttgtacataagcacttat 440  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  46213773 tatattttgttatagaaatagcttttacataagcacttat 46213734  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 440
Target Start/End: Complemental strand, 29588850 - 29588811
Alignment:
Q  401 tatattttgttacagaaatagcttgtacataagcacttat 440  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  29588850 tatattttgttatagaaatagcttatacataagcacttat 29588811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 10640107 - 10640066
Alignment:
Q  251 gcctgtttggattagcttattcgagtttatctgttgacataa 292  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  10640107 gcctgtttggattagcttatttgagtttatctactgacataa 10640066  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 3758018 - 3757980
Alignment:
Q  401 tatattttgttacagaaatagcttgtacataagcactta 439  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  3758018 tatattttgttacaaaaatagcttatacataagcactta 3757980  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 5407370 - 5407440
Alignment:
Q  251 gcctgtttggattagcttattcgagtttatctgttgacataatcacttttaagattgtttgggagggctta 321  Q
    ||||||||| ||||||||||| ||| |||||| |||| |||||||||| | | ||||||||| || |||||    
T  5407370 gcctgtttgcattagcttatttgagcttatctattgatataatcacttgtgatattgtttggcagagctta 5407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 33307681 - 33307719
Alignment:
Q  402 atattttgttacagaaatagcttgtacataagcacttat 440  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  33307681 atattttgttactgaaatagcttatacataagcacttat 33307719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 42039125 - 42039091
Alignment:
Q  405 ttttgttacagaaatagcttgtacataagcactta 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  42039125 ttttgttacagaaatagcttatacataagcactta 42039091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 8536150 - 8536187
Alignment:
Q  403 tattttgttacagaaatagcttgtacataagcacttat 440  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  8536150 tattttgttatagaaatagcttatacataagcacttat 8536187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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