View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451_low_1 (Length: 411)
Name: NF0451_low_1
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 5440459 - 5440832
Alignment:
| Q |
11 |
cataggtggaaaatatttgattgcattctcaggctgaaatgaccggataactgtcttctctatatttgtacattcaaacgttgttgtaccatgatctttt |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5440459 |
cataggtggaaaagatttgattgcattctcaggctgaaatgaccggataactgtcttctctatatttgtacattcaaacattgttgtaccatgatctttt |
5440558 |
T |
|
| Q |
111 |
acaagctgaatttccattgatgccttcattttttgcataacataaataaataaaaccaatagtgatatggacaacatgattaatggtagatatacaacat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5440559 |
acaagctgaatttccattgatgccttcattttttgcataacataaataaataaaaccaatagtgatatggacaacatgactaatggtagatatacaacat |
5440658 |
T |
|
| Q |
211 |
aataacttaatattattttttgaaggatttcaaatagtagcaagaatctac-agtgaagagaattttaaaatttctatagttgctcatatagtcttatgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5440659 |
aataacttaatattattttttgaaggatttcaaatagtagcaagaatctacgaatgaagagaattttaaaatttctatagttgctcatatagtcttatgt |
5440758 |
T |
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| Q |
310 |
tgtcaatatgtatgaagatcataaaacaatttaagcatgccaacattatgcatgagcatacaaaagatggtgat |
383 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5440759 |
tgtcaatatgtatgaagatcataaaacaatttcagcatgccaacattatgcatgagcatacaaaagatggtgat |
5440832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 3857627 - 3857549
Alignment:
| Q |
11 |
cataggtggaaaatatttgattgcattctcaggctgaaatgaccggataactgtcttctctatatttgtacattcaaac |
89 |
Q |
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||||||| |||||||||||||||||| |||| || ||||||| | || |||||||||| |||||||||||||||||| |
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| T |
3857627 |
cataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggctgtcttctcaatatttgtacattcaaac |
3857549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 3866384 - 3866306
Alignment:
| Q |
11 |
cataggtggaaaatatttgattgcattctcaggctgaaatgaccggataactgtcttctctatatttgtacattcaaac |
89 |
Q |
| |
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||||||| |||||||||||||||||| |||| || ||||||| | || |||||||||| |||||||||||||||||| |
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| T |
3866384 |
cataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggctgtcttctcaatatttgtacattcaaac |
3866306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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