View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0451_low_13 (Length: 208)
Name: NF0451_low_13
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0451_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 24928882 - 24928792
Alignment:
| Q |
12 |
gaggagcagagagaaagagaatgaaaagaatgacattctacttcttcaaaactctgaggaacttgatttgtccaacttgggtatgtttttt |
102 |
Q |
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| T |
24928882 |
gaggaggagagagaaagagaatgaaaagaatgaccttctacttcttcaaaactctgaggaacttgatttgtccaacttgggtatgtttttt |
24928792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 24927476 - 24927391
Alignment:
| Q |
103 |
acaagagttttttgttatcaggcttcttacaccaccggatacaccgctttttcctactttagacaaggaggcacaaatgccattga |
188 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
24927476 |
acaagagtttttcgttatcaggcttcttacaccacctgatacaccactttttcctactttagacaaggagtcacaaatgccattga |
24927391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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