View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0452_high_1 (Length: 469)
Name: NF0452_high_1
Description: NF0452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0452_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 31 - 462
Target Start/End: Complemental strand, 2311307 - 2310876
Alignment:
| Q |
31 |
gcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2311307 |
gcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattca |
2311208 |
T |
|
| Q |
131 |
aacctgcaaattgtgaataaagtgggttgagaacaagcataagcatatatgtaatgagacaacattgaatgacagaagggaccattagatcatagcagat |
230 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2311207 |
aacatgcaaattgtgaataaagtgggttgagaacaagcataagcatatatgtaatgagacaacattgaatgacagaagggaccattagatcatagcagat |
2311108 |
T |
|
| Q |
231 |
gcaggacagaaaaaagctatatcagatcattgttagatagtcagggccattaatagaatgttacaaagttgatagatgcatcaacagaaaagttatatca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2311107 |
gcaggacagaaaaaagctatatcagatcattgttagatagccagagccattaatagaatgttacaaagttgatagatgcatcaacagaaaagttatatca |
2311008 |
T |
|
| Q |
331 |
tgattgatgaacctatctatgactataaggaagaataatcaacataaacagagccattgctcataaattcttaaaatatttttcctccaagaatttcatc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2311007 |
tgattgatgaacctatctatgactataaggaagaataattaacataaacagagccattgctcataaattcttaaaatatttttcctccaagaatttcatc |
2310908 |
T |
|
| Q |
431 |
tacaacagagtccacttctctattctctgctc |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2310907 |
tacaacagagtccacttctctattctctgctc |
2310876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 2927962 - 2928337
Alignment:
| Q |
30 |
cgcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
2927962 |
cgcttaactttcccagctcctcgtagactttaggagccacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattc |
2928061 |
T |
|
| Q |
130 |
aaacctgcaaattgtgaataaagtgggttgagaacaagcataagcatatatgt----aatgagacaacattgaatgacagaagggaccattagatcatag |
225 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
2928062 |
aaacctgcaaattgtgaataaattgggttgagaacaaacataagcatatatgtaacaaagaagacaacattgaatgacagaaaggaccattagaacacag |
2928161 |
T |
|
| Q |
226 |
cagatgcaggacagaaaaaagctatatcagatcattgttagatagtcagggccattaatagaatgttacaaagttg--atagatgcatcaacagaaaagt |
323 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||| || ||||||||||||| |||||| | |
|
|
| T |
2928162 |
cagatgcagcacagaaaaaagccataccagatcactgttagatagtc-------gtaatagaatgttacaaaggtgatatagatgcatcaatagaaaact |
2928254 |
T |
|
| Q |
324 |
tatatc--atgattgatgaacctatctatgactataaggaagaataatcaacataaacagagccattgctcataaattcttaaaatattt |
411 |
Q |
| |
|
|| | ||| | |||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2928255 |
taaggccactga-tcatgaacctat------ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
2928337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 10173717 - 10173789
Alignment:
| Q |
74 |
ggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacctgcaaattgtga |
146 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||| || || ||||||||| |
|
|
| T |
10173717 |
ggatcatagccagcggctgccattagtagaagcccaatgtaatccgcttcaaattcacacttgtaaattgtga |
10173789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 1237932 - 1238027
Alignment:
| Q |
74 |
ggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacctgcaaattgtgaataaagtgggttgagaacaagca |
169 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1237932 |
ggatcatagccaactgctgccattagtagaagcccaatgtaatccgcttcaaattcaaacctgcaaattgtgaataaattggattgagaacaagca |
1238027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 29088853 - 29088970
Alignment:
| Q |
63 |
gtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacctgcaaattgtgaataaagtgggttgaga |
162 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||| | ||| |||||| |
|
|
| T |
29088853 |
gtgccagccgaggatcatagccagctgatgccattagtagaagcccaatgtaatcaacttcaaattcaaaactgcaaattgtgaatacattggattgaga |
29088952 |
T |
|
| Q |
163 |
acaagcataagcatatat |
180 |
Q |
| |
|
| |||||| || |||||| |
|
|
| T |
29088953 |
ataagcatgagtatatat |
29088970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 1175509 - 1175414
Alignment:
| Q |
74 |
ggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacctgcaaattgtgaataaagtgggttgagaacaagca |
169 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
1175509 |
ggatcatagccagctgctgccatcagtagaagcccaatgtaatcagcttcatattcaaacctgcaaattgtgaataaattttgttgagaacaagca |
1175414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 23906457 - 23906529
Alignment:
| Q |
53 |
tagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaa |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | ||| | || | |||||| |||||||||||||||| |
|
|
| T |
23906457 |
tagactttaggtgccacccggggatcatagccagccgatgcaagtaatagaagccgaatgtaatcagcttcaa |
23906529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 794359 - 794438
Alignment:
| Q |
87 |
ctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacctgcaaattgtgaataaagtgggttgagaacaa |
166 |
Q |
| |
|
||||||| |||||| |||||| |||||||| ||||||||||||||| |||||| |||||| | ||| |||||||||| |
|
|
| T |
794359 |
ctgctgcgattagtataagcccaatgtaatcgtattcaaattcaaaccttcaaattatgaatatattggattgagaacaa |
794438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 43286784 - 43286855
Alignment:
| Q |
105 |
gcccgatgtaatcagcttcaaattcaaacctgcaaattgtg-aataaagtgggttgagaacaagcataagca |
175 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||| || |||||| ||||||||||||| |||| |||| |
|
|
| T |
43286784 |
gcccaatgtaatcagcttcaaattcaatcctacaaattatgaaataaattgggttgagaacaggcatgagca |
43286855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 907876 - 907789
Alignment:
| Q |
38 |
tttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaa |
125 |
Q |
| |
|
||||||| || ||||||||||||||||||||| || || ||||| || || | ||||| || | |||| || |||||||||||||||| |
|
|
| T |
907876 |
tttcccaacttctcgtagactttaggtgccacacgtgggtcataaccggcagatgccactaatagaagaccaatgtaatcagcttcaa |
907789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1568 times since January 2019
Visitors: 3232