View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0452_high_5 (Length: 224)
Name: NF0452_high_5
Description: NF0452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0452_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 52695908 - 52695721
Alignment:
| Q |
29 |
caaatccaaatccctatcccaaacctgtaactgatcaatctacttatttatctgtttctaaatactccaaatcaaaggaagctgatagcatctctaccac |
128 |
Q |
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|||||||||||||| ||| ||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
52695908 |
caaatccaaatcccaatctcaaacctaaaactaatcaatctactgatttatctgtttctcaatactccaaatcaaaggaagcttatagcatctctaccac |
52695809 |
T |
|
| Q |
129 |
tacttcttctttcatgtacaccatcaccggagatggaagcgtttcagacggtaaaataggtccgatcatttcctctggcaagcctcct |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52695808 |
tacttcttctttcatgtccaccatcaccggagatggaagcgtttccgacggtaaaataggtcctatcatttcctctggcaagcctcct |
52695721 |
T |
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