View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0452_low_10 (Length: 234)
Name: NF0452_low_10
Description: NF0452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0452_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 53415625 - 53415485
Alignment:
| Q |
1 |
ttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagta |
100 |
Q |
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| T |
53415625 |
ttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagta |
53415526 |
T |
|
| Q |
101 |
ttatcgcctgaagttcatcaatcttttcattcaactttgaa |
141 |
Q |
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| T |
53415525 |
ttatcgcctgaagttcatcaatcttttcattcaactttgaa |
53415485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 53411895 - 53411756
Alignment:
| Q |
6 |
tccaagtatatgtttgcatgctctctaaatt----taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtat |
101 |
Q |
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| T |
53411895 |
tccaagtatatgtctacatgccctctaaattaaaataaaataaaatgagccagtgacgagaaattcatttacaccaaggtttccaaactctaaatagtat |
53411796 |
T |
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| Q |
102 |
tatcgcctgaagttcatcaatcttttcattcaactttgaa |
141 |
Q |
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| T |
53411795 |
tatcacctgaagttcaacaatcttttcatttaactttgaa |
53411756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 53366951 - 53367054
Alignment:
| Q |
38 |
aaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaactt |
137 |
Q |
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| T |
53366951 |
aaaataaaatgagccagtgacaagaaattcatttacaccaaggtttccaaattctaaatagtattatcacctgaagttcaacaatcttttcatttaattt |
53367050 |
T |
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| Q |
138 |
tgaa |
141 |
Q |
| |
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|||| |
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| T |
53367051 |
tgaa |
53367054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 53415497 - 53415445
Alignment:
| Q |
160 |
attcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
212 |
Q |
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| T |
53415497 |
attcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
53415445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 53318269 - 53318218
Alignment:
| Q |
161 |
ttcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
212 |
Q |
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| T |
53318269 |
ttcaacttcgaaatttgttcactgtgagattttgaaacactacgttgatgat |
53318218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 53411764 - 53411727
Alignment:
| Q |
164 |
aactttgaaatttgttcactgtgaatttttgaaacact |
201 |
Q |
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| T |
53411764 |
aactttgaaatttgtgcactgtgattttttgaaacact |
53411727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 14923044 - 14922913
Alignment:
| Q |
10 |
agtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcct |
109 |
Q |
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||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||| || ||||||| || |||||||||||||||| ||||||| ||| |
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| T |
14923044 |
agtatatgtttacatgccctctaaatttcaaacaaaatgagccggtgaggagaaattgatccacaccatggtttccaaattctaaagaatattatcacct |
14922945 |
T |
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| Q |
110 |
gaagttcatcaatcttttcattcaactttgaa |
141 |
Q |
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| T |
14922944 |
taagttcatcaatcttttcattcaactttgaa |
14922913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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