View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0452_low_3 (Length: 453)
Name: NF0452_low_3
Description: NF0452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0452_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Original strand, 30629314 - 30629722
Alignment:
| Q |
30 |
ttatataaatgatggtacgacaaatattgcggttatgtggccatgatgttgtagagattatgtcattatctaagtgatcatatgcgaatatattttatat |
129 |
Q |
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| T |
30629314 |
ttatataaatgatggtacgacaaatattgcggttatgtggccatgatgttgtagagattatgtcattatctaagtgatcatatgcgaatatattttatat |
30629413 |
T |
|
| Q |
130 |
agatagcaaggcagtgaaagagagaattgtgttacatgtgaagtgatttttcctatcttagaactctatttggaataagtgtatctttgtattcaacttc |
229 |
Q |
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| T |
30629414 |
agatagcaaggcagtgaaagagagaattgtgttacatgtgaagtgatttttcctatcttagaactctatttggaataagtgtatctttgtattcaacttc |
30629513 |
T |
|
| Q |
230 |
tagtttgaaggtgcttatgagtttatgctttcttccgattttgtgttgtaaattaaacattttaattttatgctatggttataatgtagattagggacca |
329 |
Q |
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| T |
30629514 |
tagtttgaaggtgcttatgagtttatgctttcttccgattttgtgttgtatattaaacattttaattttatgatatggttataatgtagattagggacca |
30629613 |
T |
|
| Q |
330 |
atttgtgattggtttgagacttgagtggtaaggaactcgagtactttaaacaagtggtcagaagtttgatttgtgactcttgtatttgaagaaaatctag |
429 |
Q |
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| T |
30629614 |
acttgtgattggtttgagatttgagtggtaaggaactcgagtactttaaacaagtggtcagaagtttgatttacgactcttgtatttgaagaaaatctaa |
30629713 |
T |
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| Q |
430 |
ttggaagag |
438 |
Q |
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| T |
30629714 |
ttggaagag |
30629722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 34329597 - 34329631
Alignment:
| Q |
372 |
actttaaacaagtggtcagaagtttgatttgtgac |
406 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
34329597 |
actttaaacaagtggtcagatgtttgatttgtgac |
34329631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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