View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0452_low_6 (Length: 289)
Name: NF0452_low_6
Description: NF0452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0452_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 51856868 - 51857117
Alignment:
| Q |
29 |
agccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaatt |
128 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
51856868 |
agccgttataattggaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacgcatcgttggatctagaaagcaataaaaagaa-tt |
51856966 |
T |
|
| Q |
129 |
gaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttcaatcagaaggaaagataaatttggatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
51856967 |
gaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttcaatcagcaggaaagataaatttggatat |
51857066 |
T |
|
| Q |
229 |
gaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51857067 |
gaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
51857117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 8945912 - 8946112
Alignment:
| Q |
29 |
agccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaatt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8945912 |
agccgttataattgaaacttcaaaataacaaca-----------taataaagattatcatgcaacacatcgttggatctagaaagcaataaaatgaaatt |
8946000 |
T |
|
| Q |
129 |
gaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttcaatcagaaggaaagataaatttggatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
8946001 |
gaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttagcaatcgatttcaatcagcaggaaagataaatttggatat |
8946100 |
T |
|
| Q |
229 |
gaaatttttctt |
240 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8946101 |
gaaatttttctt |
8946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 43263118 - 43263171
Alignment:
| Q |
29 |
agccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
82 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43263118 |
agccgtaataattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1795 times since January 2019
Visitors: 3237