View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0452_low_7 (Length: 258)
Name: NF0452_low_7
Description: NF0452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0452_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 23152153 - 23152233
Alignment:
| Q |
1 |
agtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctag |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23152153 |
agtcaggagtatcagcaaagtgcaaagcagacgaccaaggatagataaacctcacatgatctgcccatgaacacttgctag |
23152233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 23135678 - 23135757
Alignment:
| Q |
2 |
gtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctag |
81 |
Q |
| |
|
|||||| |||||||||||||| | || |||||||| || ||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23135678 |
gtcaggtgtatcagcaaagtgtagaggggaagaccactgaaagataaacctcacatgatctgcccatgaacacttgctag |
23135757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 49866626 - 49866654
Alignment:
| Q |
9 |
gtatcagcaaagtgcaaagcagaagacca |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49866626 |
gtatcagcaaagtgcaaagcagaagacca |
49866654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1690 times since January 2019
Visitors: 3233