View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0453_high_1 (Length: 534)
Name: NF0453_high_1
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 158 - 505
Target Start/End: Complemental strand, 28998531 - 28998184
Alignment:
| Q |
158 |
gaaagttaagatctatggatgatatgtatgataagtaaaaaagaacattccttaattattagagtttttggaaacataatagaaaagagaaaagatcttg |
257 |
Q |
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| T |
28998531 |
gaaagttaagatctatggatgatatgtatgataagtaaaaaagaacattccttaattattagagtttttggaaacataatagaaaagagaaaagatcttg |
28998432 |
T |
|
| Q |
258 |
aagtggagtaagtaggaagaccaaccttagcatgacatagacctagagctcaaaagtagatgttgccagaaaaccctaattctggtatgnnnnnnnattg |
357 |
Q |
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| T |
28998431 |
aagtggagtaagtaggaagcccaaccttagcatgacatagacctagagctcaaaagtagatgttgccagaaaaccctaattctggtatgtttttttattg |
28998332 |
T |
|
| Q |
358 |
atacctgagcttaaccaaagcaagacaatgagagttataaagaaagaattaatgaaaactgtaaagactaaaaaggacttgcagttggccaagaaagaga |
457 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28998331 |
atacctgagcttaaccaaagcaagacaatgagagttttaaagaaagaattaatgaaaactgtaaagactaaaaaggacttgcagttggccaagaaagaga |
28998232 |
T |
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| Q |
458 |
gggtcaagagattcttaattaaataccaaaactcattttagttcaaaa |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28998231 |
gggtcaagagattcttaattaaataccaaaactcattttagttcaaaa |
28998184 |
T |
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