View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0453_low_11 (Length: 275)
Name: NF0453_low_11
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 35307233 - 35307468
Alignment:
| Q |
30 |
cttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgag |
129 |
Q |
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| T |
35307233 |
cttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgag |
35307332 |
T |
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| Q |
130 |
agtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatg |
229 |
Q |
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| T |
35307333 |
agtatcaagtggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatg |
35307432 |
T |
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| Q |
230 |
cgatttctgaaaaattggcactctccttggcctatg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35307433 |
cgatttctgaaaaattggcactctccttggcctatg |
35307468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 35322234 - 35322469
Alignment:
| Q |
30 |
cttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgag |
129 |
Q |
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| T |
35322234 |
cttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgag |
35322333 |
T |
|
| Q |
130 |
agtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatg |
229 |
Q |
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| T |
35322334 |
agtgtcaagaggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatg |
35322433 |
T |
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| Q |
230 |
cgatttctgaaaaattggcactctccttggcctatg |
265 |
Q |
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| T |
35322434 |
cgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 35311576 - 35311814
Alignment:
| Q |
30 |
cttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgag |
129 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35311576 |
cttgagacccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgag |
35311675 |
T |
|
| Q |
130 |
agtatcaagaggtgctaaattagtgtca---ccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtat |
226 |
Q |
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| T |
35311676 |
agtatcaagtggtgctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtat |
35311775 |
T |
|
| Q |
227 |
atgcgatttctgaaaaattggcactctccttggcctatg |
265 |
Q |
| |
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|||||| ||||||| ||| | |||||||||||||||||| |
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| T |
35311776 |
atgcgagttctgaacaatcgacactctccttggcctatg |
35311814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 43 - 265
Target Start/End: Original strand, 35289448 - 35289670
Alignment:
| Q |
43 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
142 |
Q |
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|||||||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||||| | ||||| || || |||||||||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
|
| Q |
143 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
242 |
Q |
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|| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
35289548 |
gccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaa |
35289647 |
T |
|
| Q |
243 |
attggcactctccttggcctatg |
265 |
Q |
| |
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|||| || ||| |||| |||||| |
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| T |
35289648 |
attgacattctgcttgacctatg |
35289670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 43 - 265
Target Start/End: Original strand, 35280103 - 35280325
Alignment:
| Q |
43 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
142 |
Q |
| |
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||||||||| ||||||||||||| | ||| ||||| | ||||| || | |||| ||||||||||||||| | |||| || || ||||||||| |
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| T |
35280103 |
attgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagagga |
35280202 |
T |
|
| Q |
143 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
242 |
Q |
| |
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|| ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
35280203 |
gccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaa |
35280302 |
T |
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| Q |
243 |
attggcactctccttggcctatg |
265 |
Q |
| |
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|||| || ||| ||||||||||| |
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| T |
35280303 |
attgacattctgcttggcctatg |
35280325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 35275336 - 35275545
Alignment:
| Q |
43 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
142 |
Q |
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|||||||||| ||||||||||||| | ||||||||| | |||| ||||| ||||| |||||||||||||| | |||||||||| || ||||| ||| |
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|
| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
|
| Q |
143 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
242 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
35275436 |
gctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaa |
35275535 |
T |
|
| Q |
243 |
attggcactc |
252 |
Q |
| |
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|||| ||||| |
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|
| T |
35275536 |
attgacactc |
35275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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