View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0453_low_13 (Length: 256)
Name: NF0453_low_13
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 41772516 - 41772735
Alignment:
| Q |
27 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttc |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41772516 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttc |
41772615 |
T |
|
| Q |
127 |
cctattagtaacaataacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaa |
226 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41772616 |
cctattactaacagtaacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattggcttgtttactttcaaa |
41772715 |
T |
|
| Q |
227 |
gcatattccttcatctcact |
246 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
41772716 |
gcatattccttcatctcact |
41772735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 35597618 - 35597399
Alignment:
| Q |
27 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttc |
126 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35597618 |
catcatcataacacaccaacacacattttcctttcttgtctaccttttccttctctagtccttctccatttacatcaacctgagaactttgtccaacttc |
35597519 |
T |
|
| Q |
127 |
cctattagtaacaataacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaa |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
35597518 |
cctattagtaacagtaacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaactggcttgtttactttcaaa |
35597419 |
T |
|
| Q |
227 |
gcatattccttcatctcact |
246 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
35597418 |
gcatattccttcatctcact |
35597399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 13650989 - 13651208
Alignment:
| Q |
27 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
13650989 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttc |
13651088 |
T |
|
| Q |
127 |
cctattagtaacaataacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaa |
226 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||| |
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|
| T |
13651089 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgttttctttcaaa |
13651188 |
T |
|
| Q |
227 |
gcatattccttcatctcact |
246 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13651189 |
gcatattccttcatctcact |
13651208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 47734205 - 47733986
Alignment:
| Q |
27 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
47734205 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctattccatctccatttacatcaacctgagaactttgtccaacttc |
47734106 |
T |
|
| Q |
127 |
cctattagtaacaataacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaa |
226 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||| |
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|
| T |
47734105 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgttttctttcaaa |
47734006 |
T |
|
| Q |
227 |
gcatattccttcatctcact |
246 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47734005 |
gcatattccttcatctcact |
47733986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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