View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0453_low_16 (Length: 220)
Name: NF0453_low_16
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_low_16 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 626545 - 626426
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
626545 |
gttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
626446 |
T |
|
| Q |
101 |
cctctaaatacgcctccatc |
120 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
626445 |
cctctaaatacgcctccatc |
626426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29868021 - 29867906
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29868021 |
gttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
29867922 |
T |
|
| Q |
101 |
cctctaaatacgcctc |
116 |
Q |
| |
|
||||||| || ||||| |
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|
| T |
29867921 |
cctctaagtatgcctc |
29867906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 33721828 - 33721947
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33721828 |
gttttcctttccttgtgatttgttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaatagcttcccagaggtcatttg |
33721927 |
T |
|
| Q |
101 |
cctctaaatacgcctccatc |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33721928 |
cctctaaatacgcctccatc |
33721947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19965487 - 19965372
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19965487 |
gttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
19965388 |
T |
|
| Q |
101 |
cctctaaatacgcctc |
116 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
19965387 |
cctctaagtatgcctc |
19965372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 21027509 - 21027624
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21027509 |
gttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
21027608 |
T |
|
| Q |
101 |
cctctaaatacgcctc |
116 |
Q |
| |
|
||||||| || ||||| |
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|
| T |
21027609 |
cctctaagtatgcctc |
21027624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 6367935 - 6368012
Alignment:
| Q |
51 |
caaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatctctgctgc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6367935 |
caaaggaagaacttcgtagtcctcctcaagagcttcgcagaggtcatttgcctctaaatacgcctccattcctgctgc |
6368012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 20786328 - 20786443
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20786328 |
gttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
20786427 |
T |
|
| Q |
101 |
cctctaaatacgcctc |
116 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
20786428 |
cctctaagtatgcctc |
20786443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29469733 - 29469618
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469733 |
gttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
29469634 |
T |
|
| Q |
101 |
cctctaaatacgcctc |
116 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
29469633 |
cctctaagtatgcctc |
29469618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 28699042 - 28699147
Alignment:
| Q |
1 |
gttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
28699042 |
gttttcctttccttgtgattatttatctgagccattgttggattgtctgacaaaggaagaactttgtagtcctcctcaacagcttcccaaaggtcatttg |
28699141 |
T |
|
| Q |
101 |
cctcta |
106 |
Q |
| |
|
|||||| |
|
|
| T |
28699142 |
cctcta |
28699147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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