View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0453_low_4 (Length: 358)
Name: NF0453_low_4
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 31273557 - 31273357
Alignment:
| Q |
11 |
aatgatatgatttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggattt |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
31273557 |
aatgatatgagttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctggaggctcgcttcaatccatagagggattt |
31273458 |
T |
|
| Q |
111 |
aaccaattatcaaacttgattgggtttagatgtcgtgataccaagtggcaactgcatgtaaacatcttcttgtaactcatcatgc-agaaaagcattgtt |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
31273457 |
aaccaattatcaaacttgattgggtttagatgtagtgataccaagtggtaactgcatgtaaacatcttcttgtaactcaccatgcaaaaaaagcattgtt |
31273358 |
T |
|
| Q |
210 |
a |
210 |
Q |
| |
|
| |
|
|
| T |
31273357 |
a |
31273357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 31272985 - 31272892
Alignment:
| Q |
210 |
attagacaatttattatatgaaagagaatcaataacatgatagctagtaaaatcagtagaattagtaggagatgatgattgatttgagatatga |
303 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
31272985 |
attagacaatttattatatgaaagagaatcagtaacatgatagctagtaaaatcagtagaattagtatgagatgatgattgatttgagacatga |
31272892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 26215028 - 26214829
Alignment:
| Q |
11 |
aatgatatgatttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggattt |
110 |
Q |
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|||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26215028 |
aatgatctgagttagcatgcttgtaaccttgagccagtaacaaagaggtgagcctttcataccattttctagaggcttgcttcaatccatagagggattt |
26214929 |
T |
|
| Q |
111 |
aaccaattatcaaacttgattgggtttagatgtcgtgataccaagtggcaactgcatgtaaacatcttcttgtaactcatcatgcagaaaagcattgtta |
210 |
Q |
| |
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||||||| ||||||||||| ||||||||||| ||||||||| |||| ||||||||||| | || |||||| || ||| |||||||||||||||||||| |
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| T |
26214928 |
taccaatttacaaacttgattaggtttagatgtagtgataccaggtggtaactgcatgtagaaattttcttgcaattcaccatgcagaaaagcattgtta |
26214829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 6532189 - 6532060
Alignment:
| Q |
11 |
aatgatatgatttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggattt |
110 |
Q |
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|||||| ||| || ||||||||||| |||||| ||| ||| ||||| || | | ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
6532189 |
aatgatctgagttggcatgcttgtagccttgaaccagtaataaagatgttaacttttcataccattttctagaggcttgtttcaatccatagagggattt |
6532090 |
T |
|
| Q |
111 |
aaccaattatcaaacttgattgggtttagat |
141 |
Q |
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|||||||| |||||||| || ||||||||| |
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| T |
6532089 |
aaccaatttgcaaacttg-ttaggtttagat |
6532060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 23374174 - 23374328
Alignment:
| Q |
22 |
ttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatc |
121 |
Q |
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|
|||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |
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| T |
23374174 |
ttagcatgcttgtaaccttgagccagcaataaagaggtgagcctttcataccattttctagaggcttgctttaatccatagagggatttaaccaatttac |
23374273 |
T |
|
| Q |
122 |
aaacttgattgggtttagatgtcgtgataccaagtggcaactgcatgtaaacatc |
176 |
Q |
| |
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||||| |||| ||||| |||| ||||||||| |||| || ||||||| |||||| |
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| T |
23374274 |
aaactagattaggtttcaatgtagtgataccaggtggtaattgcatgttaacatc |
23374328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 23375931 - 23376020
Alignment:
| Q |
211 |
ttagacaatttattatatgaaagagaatcaataacatgatagctagtaaaatca--gtagaattagtaggagatgatgattgatttgaga |
298 |
Q |
| |
|
||||||| ||||||||||||| |||||||| ||| | |||| |||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
23375931 |
ttagacagtttattatatgaatgagaatcagtaataagataactagtaaaatcatggtagaattagtaggagaagatgattgatttgaga |
23376020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 4941677 - 4941780
Alignment:
| Q |
37 |
ccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtt |
136 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| ||| ||||| || ||||||| ||||||| ||||| ||||||||||| |||| |
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| T |
4941677 |
ccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtt |
4941776 |
T |
|
| Q |
137 |
taga |
140 |
Q |
| |
|
|||| |
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| T |
4941777 |
taga |
4941780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 5026757 - 5026860
Alignment:
| Q |
37 |
ccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtt |
136 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| ||| ||||| || ||||||| ||||||| ||||| ||||||||||| |||| |
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|
| T |
5026757 |
ccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtt |
5026856 |
T |
|
| Q |
137 |
taga |
140 |
Q |
| |
|
|||| |
|
|
| T |
5026857 |
taga |
5026860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 16157946 - 16157831
Alignment:
| Q |
25 |
gcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaa |
124 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||| | |||||||||||||||||||||| ||| ||||| || ||||||| ||||| ||||||| |||| |
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|
| T |
16157946 |
gcatgcttatatccttgagccagtaataaagcagcgagcctttcataccattttctactggcctgctttaaaccatagagagattttaccaatttacaaa |
16157847 |
T |
|
| Q |
125 |
cttgattgggtttaga |
140 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
16157846 |
ctcgattaggtttaga |
16157831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 15758496 - 15758455
Alignment:
| Q |
165 |
catgtaaacatcttcttgtaactcatcatgcagaaaagcatt |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||| |
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|
| T |
15758496 |
catgtaaacatcttcttgtaactcaccatgaagaaatgcatt |
15758455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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