View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0453_low_5 (Length: 328)
Name: NF0453_low_5
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_low_5 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 328
Target Start/End: Original strand, 4856564 - 4856809
Alignment:
| Q |
83 |
acatcatcatgtctaaacaacaaaaggggtttaactcgtgttgagcttaacctcaaaaacgggaagaaaagaagagatagatgaaaacataatagccaca |
182 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4856564 |
acatcatcatatctaaacaacaaaaggggtttaactcgtgttgagcttaacctcaaaagcgggaagaaaagaagaaatagatgaaaacataatagccaca |
4856663 |
T |
|
| Q |
183 |
ttaaatgagaaacaaaagttagaaaatgattacactctaaaagggaaagacgatagcttaaccatcaacaaagtaattctaactctacttcactaagaac |
282 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
4856664 |
ttaaatgagaaacaaaagttacaaaatgattacactctaaaagggaaagaggatagcttaagcatcaccaaagtaatcataactctacttcactaagaac |
4856763 |
T |
|
| Q |
283 |
tatatatcgctcatgctcatctatgcatctatgacgtagatgagat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4856764 |
tatatatcgctcatgctcatctatgcatctatgacgtagatgagat |
4856809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 26100020 - 26099935
Alignment:
| Q |
199 |
agttagaaaatgattacactctaaaagggaaagacgatagcttaaccatcaacaaagtaattctaactctacttcactaagaacta |
284 |
Q |
| |
|
||||||||| |||||||||| | || |||||| | ||||||| ||||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
26100020 |
agttagaaaccgattacactccacaaatgaaagaggtgagcttaaacatcaccaaagtaattataactctaattcactaagaacta |
26099935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 34851483 - 34851443
Alignment:
| Q |
192 |
aaacaaaagttagaaaatgattacactctaaaagggaaaga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
34851483 |
aaacaaaagttagaaaatgattacactcaaaaaaggaaaga |
34851443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University