View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0453_low_9 (Length: 280)
Name: NF0453_low_9
Description: NF0453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0453_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 27488189 - 27488386
Alignment:
| Q |
28 |
agagataaaagttcttgaatcagagctggagggtaggatttaaggatgagcctatactcttactatctcaaaaacaacannnnnnnnnnnnatgaaagtt |
127 |
Q |
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| T |
27488189 |
agagataaaacttcttgaatcagagctggagggtaggatttaaggacgagcctatactcttactatctcaaaaacaacatttttttt----atgaaagtt |
27488284 |
T |
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| Q |
128 |
gctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatagattctgatgaataaaagctgatcgtaatgtatcttccgattggt |
227 |
Q |
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| T |
27488285 |
gctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatatattctgatgaataaaagctgatcggaatgtatcttccgattggt |
27488384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 27480837 - 27481034
Alignment:
| Q |
28 |
agagataaaagttcttgaatcagagctggagggtaggatttaaggatgagcctatactcttactatctcaaaaacaacannnnnnnnnnnnatgaaagtt |
127 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27480837 |
agagataaaacttcttgaatcagagctggagggtaggatttaaggacgagcctatactcttactatctcaaaaacaacatttttttt----atgaaagtt |
27480932 |
T |
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| Q |
128 |
gctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatagattctgatgaataaaagctgatcgtaatgtatcttccgattggt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
27480933 |
gctctatagacctctaggttgctcaataaccttgaaaaaggtcgaacgaagtatatattcagatgaataaaagctgatcggaatgtatcttccgattggt |
27481032 |
T |
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