View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0454_high_6 (Length: 334)
Name: NF0454_high_6
Description: NF0454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0454_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 39805621 - 39805848
Alignment:
| Q |
30 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39805621 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
39805720 |
T |
|
| Q |
130 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39805721 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
39805820 |
T |
|
| Q |
230 |
tctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39805821 |
tctttgggttcacaacttcagctcagaa |
39805848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 39825985 - 39826212
Alignment:
| Q |
30 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39825985 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
39826084 |
T |
|
| Q |
130 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39826085 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
39826184 |
T |
|
| Q |
230 |
tctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39826185 |
tctttgggttcacaacttcagctcagaa |
39826212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 39902546 - 39902773
Alignment:
| Q |
30 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902546 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
39902645 |
T |
|
| Q |
130 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902646 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
39902745 |
T |
|
| Q |
230 |
tctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39902746 |
tctttgggttcacaacttcagctcagaa |
39902773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 39922147 - 39922374
Alignment:
| Q |
30 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922147 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
39922246 |
T |
|
| Q |
130 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922247 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
39922346 |
T |
|
| Q |
230 |
tctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39922347 |
tctttgggttcacaacttcagctcagaa |
39922374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 39927843 - 39928070
Alignment:
| Q |
30 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39927843 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
39927942 |
T |
|
| Q |
130 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39927943 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
39928042 |
T |
|
| Q |
230 |
tctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39928043 |
tctttgggttcacaacttcagctcagaa |
39928070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 39911004 - 39911231
Alignment:
| Q |
30 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39911004 |
gcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatgga |
39911103 |
T |
|
| Q |
130 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39911104 |
accaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcatttttccaaatagcatcaagcaatgaaccacttgatt |
39911203 |
T |
|
| Q |
230 |
tctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39911204 |
tctttgggttcacaacttcagctcagaa |
39911231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 39814907 - 39815133
Alignment:
| Q |
31 |
cagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39814907 |
cagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtcttaagaggttctggtagaattcaaatagtgtttccaaatggaa |
39815006 |
T |
|
| Q |
131 |
ccaatgcaatggacacacatattaaacaaggagatgttttctttgtaccaagatacttcgcattttgccaaatagcatcaagcaatgaaccacttgattt |
230 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815007 |
ccaatgcaatggacacacatataaaacaaggagatgttttctttataccaagatactttgcattttgccaaatagcatcaagcaatgaaccacttgattt |
39815106 |
T |
|
| Q |
231 |
ctttgggttcacaacttcagctcagaa |
257 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
39815107 |
ctttggattcacaacttcagctcagaa |
39815133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 22362159 - 22362048
Alignment:
| Q |
32 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
131 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||||||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
22362159 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagagtataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
22362060 |
T |
|
| Q |
132 |
caatgcaatgga |
143 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22362059 |
caatgcaatgga |
22362048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 286 times since January 2019
Visitors: 3262